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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAGAGGCTAAAGCTGCAACTGCAGAGGAGAGAGAACGATCTGTGAATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAGgttctgtaatttctcaagtgaaattatgtctttaatggcaattttgtgtatacatgacttactttgtactttaacaatgaattacag

Basic information

species Glycine max
transcript GLYMA15G01980.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 12
GAAGCAGAGGCTAAAGCTGCAACTGCAGAGGAGAGAGAACGATCTGTGAATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAGgttctgtaatttctcaagtgaaattatgtctttaatggcaattttgtgtatacatgacttactttgtactttaacaatgaattacag
|| || |||||||||||||||||||| ||||| | |||  ||||||| ||||||||||| || || ||||||||| || | ||||||||||| || |||||  |   | |||    ||| | |   |    || |      ||||| ||||      ||   |   |||   |  |||        
GAGGCGGAGGCTAAAGCTGCAACTGCTGAGGAAAAAGAGAGATCTGTAAATGAACGCTTGTCGCAAACCTTATCTAGAGTAAATGTCCTTGAAGCACAGgtgattccaattcctctgtggattacagatgctagttatggatttgt-tatatgaatattgactcacactagtaagatgcgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814203|gb|BI786478.1|BI786478
EST:     CTTATCTCGAATTAATGTCCTTGAGGCTCAG                         ATTTCATGTCTTAGAGCTGAACAGACTCAGTTAAGTAGGACCCTTGAAAAG
genomic: CTTATCTCGAATTAATGTCCTTGAGGCTCAGgttctgtaat ... tgaattacagATTTCATGTCTTAGAGCTGAACAGACTCAGTTAAGTAGGACCCTTGAAAAG