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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatctagttatctgctcttttccttcttattcgttgtttaatttaattttgttatttatcttgtgtcag

Basic information

species Glycine max
transcript GLYMA15G01680.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 13
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagt--actttgattaggtgacatctagttatctgctcttttc-cttcttattcgttgtttaatttaattttgttatt-tatcttgtgtcag
 || ||||| |  ||| |||||||||| ||||  |||||||| |||||||||||||||||||| || ||  | ||    ||||||||||| ||||| ||||| |||  | | | ||    ||| || ||   ||     |||||  |   ||      ||    |  || |||||| | | ||| ||  |    
TTTTGGTGGAATATTATTGGCGATGTGTTCCAGTGATTTCATTTGCTTTTATGACTGGGCTGACTGTAGACTAATACGCCGCATTGATGTGAATGTCAAAgtgagtcaaatattatctattgatatttatagattgatacttttaacgaatttcatactgaaataactagttttgtcactgtatttttag----

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaa-gtactttgattaggtgacatct-agttatctgctcttttccttcttattcgttgt-ttaatttaattttgttat-ttatcttgtgtcag
||| |||||    ||||| || |||||  | || || ||||| ||||||||||| ||||  |||||||| |||||   ||| ||||||||||||||||| |||| | | |||| |    |   || | |    | |  |    | | |   ||| |   | ||     | |      || ||   ||||||   
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag-

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatctagttatctgctcttttccttcttattcgttgtttaatttaattttgttatttatcttgtgtcag---
 |  |||||    ||  |||| ||||| || |  || |||||||||||||||||||||||||| || ||  | ||    || || ||||| ||||| || || |||      |     | |  | |  ||   ||    |||  |   |||  |||   |||| | |   | || |||||| |||||      
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagt----caaaagtattatttttccttgggtggaaattttgtatgtatgagtt---taatattaaccttttgtttatcatgtgtttatag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatctagttatctgctcttttccttcttattcgttgtttaatttaattttgttatttatcttgtgtcag---
 || |||||    ||  |||| ||||| || |  ||||||||||||||||||||||||| ||| || ||  | ||    || || ||||| ||||| || || | |    | ||||  |    |   ||       |  | |      | |  |  ||||| | | |   | || |||||| ||  |      
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaatcaagt-attattttttcttgggtggaaattttgtatgtaaaatgtatga-gtttactattaaccttttctttatcatgcatttatag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagta-----ctttgattaggtgacatctagttatctgctcttttccttcttattcgttgtttaatttaattttgttattta-tcttgtgtcag------
||  || ||    || || || || ||  | || |||||||| || |||||||||||||| || |||||||||||   ||| ||||| || ||||| ||||| |||       |||| ||  |  |    ||   |||   | ||||   |||| || |   || |    | |    ||  ||| ||||||| | |      
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgcttcagcaatggatacccatcatgtgtttttactcttttttgcc-ttaacgccactggaattgattactcttgtgcctggtgtag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 13
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgta----agt--actttgattaggtgacatctagttatctgctcttttccttcttattcgttgtttaatttaattttgtta--tttatcttgtgtcag---------------------------------------------------
 || || || || ||  | || ||||| || |  |||||||||||||||||||| ||||||||||| ||| ||||  | || ||||| |||| ||| || |||    |||  |||| | | || | |     ||   | | ||      | | ||     | ||  ||  |||| |  ||   || |  ||| |                                                       
CTTTGGAGGAACCTTGTTAGCTATGTGTTCAAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGATTCAACGTATTGACGTCACTGTAAAGgtatcccagttaacttggctcagtttattgtaagaagtttacttcaagacatatttggaatagtggaaactaatatcattgccttcagtttgaggttttcctcgtttgtttcttctctaatttgtagtgttgctacataacgtttgcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 13
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatc-tagttatctgctcttttccttctt---attcgttgtttaatttaattttgttatttatcttgtgtcag
 |  || ||  |  | |||||||| ||||| || || ||||| || ||||||||||||||||| |||||||||||    || |||||||||||||| || | | || ||   |  || | || ||  | ||| | | | ||  ||        | |  | ||| | ||   ||| | |  ||    | | ||||
TTATGGAGGGGCACTTCTGGCGATATGCTCAAATGACTTCATTTGTTTTTATGACTGGGCTGAGTGCAGGTTGATTCGGCGGATTGATGTCAATGTCAAGgcatgttctc-aaaaagcttacttcacaattaccaggttttggccacagagaaactaatagttcatttc--tttgggtggtttcaatatttcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 13
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatctagttatc-tgctcttttccttcttattcgttgtttaatttaattt--tgttatttatcttgtgtcag------------------
 || || || |||||| |||| |||||||| || ||||| || || || ||||||||||||||||||||| ||||    || |||||||| ||||| |||||||| |||   || | | | |   | | || | || | || |  |  |    |  ||    | || |||   ||||  || | |  | ||                    
TTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGGCTGAATGCAGGCTGATTCGACGAATTGATGTTAATGTCAAAgtaagcactaacatgatg-gcctgttggctaccgtggtattgttttcatgccacactgcaggaattgattaaatgttccttttttcttttctttttttttcactatttcag