Sequence
atgc intronic sequence ATGC exonic sequenceGCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaatgatgctttcaatttatgggaacagataaaaagatgtattccctcccccgatactgtcttgaacacgttaccttattggcatgtgccttatttactactttggttttgcag
Basic information
species | Glycine max |
transcript | GLYMA14G39890.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G39890.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G101383_T01 (Zea mays), 5'ss of exon 14
GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaatgatgctttcaatttatgggaacagataaaaag-atgtattccctcccccgatactgtcttgaacacgttaccttattggcatgtgccttatttactactttggttttgcag------------------------------------------------------------------------------
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GCTGGAACATACATCAAGGAATTTGTGCATGGTGATCTTGGACGCACGCATCCCAGgtagcgt---tgtctctatttagccttgtcactagccaaattccaactgtcaaatacacaaatcttttcatgaaaaaaaaactgcat-gttaagt-cctcaccagtcattttggtataaagattgaactgatgaccttgctttacactttacagtaacactacaatcctgataggcctcgttccactttgcctattgcag
upper sequence: GLYMA14G39890.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g00500.t01 (Vitis vinifera), 5'ss of exon 14
GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaatg---atgctttcaatttatgggaacagataaaaagatgtattccctcccccgatactgtcttgaacacgttaccttattggcatgtgccttatttactactttggttttgcag
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GCTGGAACATATATCAAGGAATTTGTTCACGGTGATCTTGGACGCACCCATCCTAGgtataaattatgcccatctctttaattc-tgtaaattgtagggagcttctattaggattttacatcttatttcctttattctatgttcatcacaagggcca-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208221094|gb|GE020764.1|GE020764EST: ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAG CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGGGACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaatgatgctttcaatttatgggaacagataaaaagatgtattccctcccccgatactgtcttgaacacgttaccttattggcatgtgccttatttactactttggttttgcag
- - - - - - - AAGGAA