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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGAAATAAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCTAGCGGTGGCCATGACAAAAAGgttagtcagtgcattattttgggaaatcgttttattcattgctttctctgttcaactgatttcctgaaattttgagtgaactatgcaattggctagcttgaaaattgacaaataaaaattaggaatgtctcttttacttattctgtttatatatggaatatgacatttgctctgattttttcataatgcag

Basic information

species Glycine max
transcript GLYMA14G16040.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 14
TTCTGAAATAAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCTAGCGGTGGCCATGACAAAAAGgttagtcagtgcattattttgggaaatcgttttattcattgctttctctgttcaactgatttcctgaaattttgagtgaact-atgcaattggctagcttgaaaattgacaaataaaaattaggaat--gtctcttttacttattctgtttatatatggaatatgacatttgctctgattttttcataatgcag
| | ||| | |  || ||  | || ||  | |  |||||| |||||||||| |||||||| ||||| ||| |||||||||| ||||||||||| |||||||| |||      |  |||   | |     | ||||| |  |       ||   | |      | ||  ||   | | || || |     ||       ||| | | | |  |  | | |  |  ||     ||  ||| |||| |    ||| ||   |                                   
TACGGAAGTCAGCTCCGTTAGAGCGAGTGCAAGTAAAGTTATCTGTTGCCACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGgtaagtgccaagaggattaaagtatcctatattattaaaagtgaatgttgaagagcactaaacatgtgatgaagggggagctcaaatgcttcatcgtgttgcatagttaggatcatagaagaataactgaactagttttcttaatggtcttaaatgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208101643|gb|GD899576.1|GD899576
EST:     GGTGGCCATGAACAAAAAG                         GCTG-TTTATGGTTCACAGATTCTACTAAAACAGAAAGCCACTCTTGAAG
genomic: GGTGGCCATG-ACAAAAAGgttagtcagt ... cataatgcagGCTGTTTTATGGTTCACAGATTCT-CTAAAACAGAAAGCCACTCTTGAAG
EST: gi|192318709|gb|FK011407.1|FK011407
EST:     ATTTCTCATCTGATGGGAAATTGCTTGCTAGCGGTGGCCATGACAAAAAG                         GCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCCACTCTTGAAGAG
genomic: ATTTCTCATCTGATGGGAAATTGCTTGCTAGCGGTGGCCATGACAAAAAGgttagtcagt ... cataatgcagGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCCACTCTTGAAGAG
EST: gi|192298457|gb|FG989178.1|FG989178
EST:     ATTTCTCATCTGATGGGAAATTGCTTGCTAGCGGTGGCCATGACAAAAAG                         GCTGTTTTATGGTTCACAGATTCCCTAAAACAGAAAGCCACTCTTGAAGAG
genomic: ATTTCTCATCTGATGGGAAATTGCTTGCTAGCGGTGGCCATGACAAAAAGgttagtcagt ... cataatgcagGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCCACTCTTGAAGAG