1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAGgtaagtaaacatgtttgcatcttttatagattcaagagataaattccaaataattcttactatcttgttttggaactcttaaaagtatgtccaatcttttttgtaaagcag
species | Glycine max |
transcript | GLYMA14G07850.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG AAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCGEST: gi|213594004|gb|DB983184.1|DB983184
genomic: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAGgtaagtaaac ... tgtaaagcagAAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCG
EST: AAGAAGAACTTTTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG AAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCGEST: gi|151401385|gb|EV271199.1|EV271199
genomic: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAGgtaagtaaac ... tgtaaagcagAAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCG
EST: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG AAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCGEST: gi|209700986|gb|BW664167.1|BW664167
genomic: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAGgtaagtaaac ... tgtaaagcagAAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCG
EST: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG AAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCGEST: gi|120532823|gb|EH260956.1|EH260956
genomic: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAGgtaagtaaac ... tgtaaagcagAAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCG
EST: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG AAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCGEST: gi|18848900|gb|BM568010.1|BM568010
genomic: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAGgtaagtaaac ... tgtaaagcagAAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCG
EST: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG AAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCG
genomic: AAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAGgtaagtaaac ... tgtaaagcagAAAAAGAAGTTTTGCTGTTGAAGAGATAACTGTACAGAACGGAGCTGTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAGgtaagtaaacatgtttgcatcttttatagattcaagagataaattccaaataattcttactatcttgttttggaactcttaaaagtatgtccaatcttttttgtaaagcag
- - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA