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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatttagttatctgctcttttccttcttattcattgtttaatataattttgttattaatcttgtgtcag

Basic information

species Glycine max
transcript GLYMA13G43680.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 13
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagt--actttgattaggtgacatttagttatctgctcttttccttcttattcattgtttaata--taattttgttattaatcttgtgtcag
 |||||||| |   || |||||||||| ||||  |||||||| |||||||||||||||||||| || ||  | ||    ||||||||||| ||||| ||||| |||  | | | ||    ||| |||||   ||     |||||      | |||||  |  ||||  || |||||| | |    || |     
TTTTGGTGGAATATTATTGGCGATGTGTTCCAGTGATTTCATTTGCTTTTATGACTGGGCTGACTGTAGACTAATACGCCGCATTGATGTGAATGTCAAAgtgagtcaaatattatctattgatatttatagattgatacttttaacgaat-ttcatactgaaataactagttttgtcactgtatttttag---

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaa-gtactttgattaggtgacattt-agttatctgctcttttccttcttattcattgtttaatataattttgttattaatcttgtgt-cag
|||||||||     |||| || |||||  | || || ||||| ||||||||||| ||||  |||||||| |||||   ||| ||||||||||||||||| |||| | | |||| |    |   |||| |    | |  |    | | |   |||     | |  |   | |       |  |  | |||  ||
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 13
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatttagttatctgctcttttccttcttattcattgtttaatataattttgttattaatcttgtgtcag---
 | ||||||     |  |||| ||||| || |  || |||||||||||||||||||||||||| || ||  | ||    || || ||||| ||||| || || |||      |     | |  |||  ||   ||    |||  |   |||     ||||||||| |   | || || ||| |||||      
TTATGGTGGGGTATTGTTGGCAATGTGTTCTAGTGACTTCATCTGCTTTTATGACTGGGCTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgagt----caaaagtattatttttccttgggtggaaattttgtatgtatga---gtttaatattaaccttttgtttatcatgtgtttatag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 12
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatttagttatctgctcttttccttcttattcatt-gtttaatataattttgttattaatcttgtgtcag---
 ||||||||     |  |||| ||||| || |  ||||||||||||||||||||||||| ||| || ||  | ||    || || ||||| ||||| || || | |    | ||||  |    ||  ||       | || |   |   ||  ||  ||||| ||| |   | || || ||| ||  |      
TTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGGTTGATTGTAGACTAATACGCCGAATCGATGTGAATGTTAAGgtgaatcaagt-attattttttcttgggtgga--aattttgtatgtaaaatgtatgagtttactattaaccttttctttatcatgcatttatag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagta-----ctttgattaggtgacatttagttatctgctcttttccttcttattcattgtttaatataattttg--ttattaatcttgtgtcag------
|| ||| ||     | || || || ||  | || |||||||| || |||||||||||||| || |||||||||||   ||| ||||| || ||||| ||||| |||       |||| ||  |  |    ||   |||   | ||||   |||| ||      ||||    | |     | |||| ||||||| | |      
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgcttcagcaatggatacccatcatgtgtttttactcttttttgcc--ttaacgccactggaattgattactcttgtgcctggtgtag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 13
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgta----agt--actttgattaggtgacatttagttatctgctcttttccttcttattcattgtttaatataattttgtta---ttaatcttgtgtcag--------------------------------------------------
 ||||| || ||  |  | || ||||| || |  |||||||||||||||||||| ||||||||||| ||| ||||  | || ||||| |||| ||| || |||    |||  |||| | | || | |   | ||   | | ||      | | ||    || ||  ||  |||| |  ||    | | | |   ||                                                     
CTTTGGAGGAACCTTGTTAGCTATGTGTTCAAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGATTCAACGTATTGACGTCACTGTAAAGgtatcccagttaacttggctcagtttattgtaagaagtttacttcaagacatatttggaatagtggaaactaatatcattgccttcagtttgaggttttcctcgtttgtttcttctctaatttgtagtgttgctacataacgtttgcag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 13
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatttagttatctgctcttttccttctt---attcattgtttaatataattttgttattaatcttgtgtcag
 | ||| ||  | || |||||||| ||||| || || ||||| || ||||||||||||||||| |||||||||||    || |||||||||||||| || | | || ||   |     |       | ||| | | | ||  ||        | | || ||| | |    ||| | |  |     | | ||||
TTATGGAGGGGCACTTCTGGCGATATGCTCAAATGACTTCATTTGTTTTTATGACTGGGCTGAGTGCAGGTTGATTCGGCGGATTGATGTCAATGTCAAGgcatgttctcaaaaagcttacttcacaattaccaggttttggccacagagaaactaatagttcatttc--tttgggtggtttcaatatttcag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 13
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagtactttgattaggtgacatttagttatc-tgctcttttccttcttattcattgtttaatataattt--tgttattaatcttgtgtcag------------------
 ||||| || ||| || |||| |||||||| || ||||| || || || ||||||||||||||||||||| ||||    || |||||||| ||||| |||||||| |||   || | | | |  || | || | || | || |  |  |    || ||    |  | |||   ||||  |  | |  | ||                    
TTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGGCTGAATGCAGGCTGATTCGACGAATTGATGTTAATGTCAAAgtaagcactaacatgatg-gcctgttggctaccgtggtattgttttcatgccacactgcaggaattgattaaatgttccttttttcttttctttttttttcactatttcag