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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCTTAAATGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCATCATATGGGGATGgtaacaatcgattaattagtagtaatttaattcaagcattcggtttggttactgatacaaaatgctattgccatgtctttgtcttgcag

Basic information

species Glycine max
transcript GLYMA13G43000.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43000.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 12
CAGTTCTTAAATGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCATCATATGGGGATGgtaacaatcgattaattagtagtaatttaattcaagcattcggtttggttactgatacaaaatgctattgccatgtctttgtcttgcag
|| ||||| || |||||||||| |||||||||||| |||||||| |  ||| | |||| ||| ||||| |||||||| || |||||||||||||| || |||||    |   |    |  | | |     |  | |  |||       ||     |  | ||  || |  ||   ||||| | ||||||
CATTTCTTGAAGGCAGTAGATGAAATCACTTTGAAGGATATCACCACCATTGCCCAGAGGATCATTTCTTCACCTCTTACAATGGCATCATATGGCGACGgtaatctccctctttccaccaatgaacccttctatgatttcaccggaattgaatcttgagaaatctctcccc---tcttt-tgttgcag