1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGTTGAAATTGACACTCTGACTGGAGATTTTCACACCAGAGTGGCAAACATATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtatttttttctataattttttattattaatttcagaatatacaaggaagtttattaaggatggagaaagaacactccagagaggacacaaattcctcta...
species | Glycine max |
transcript | GLYMA13G41520.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TATTTCTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAG ATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTEST: gi|308222717|gb|HO760627.1|HO760627
genomic: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
EST: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAG ATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTEST: gi|254341946|gb|GR853083.1|GR853083
genomic: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
EST: CTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAG ATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTEST: gi|7926265|gb|AW832291.1|AW832291
genomic: CTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
EST: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAG ATCGANGGAGCTNTTATCCAAAGTTTGGGTTGGGTAGCTTTAGAAEST: gi|254337732|gb|GR845302.1|GR845302
genomic: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAA
EST: CAGCGATAGATGTT-GACAG ATCGA-GGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTEST: gi|8284147|gb|BE021706.1|BE021706
genomic: CAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
EST: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAG ATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTEST: gi|8401863|gb|BE057497.1|BE057497
genomic: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
EST: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAG ATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTEST: gi|13788348|gb|BG650940.1|BG650940
genomic: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
EST: GATAGATGTTGGACAG ATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTEST: gi|254343201|gb|GR856905.1|GR856905
genomic: GATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
EST: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAG ATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTEST: gi|10709625|gb|BF009349.1|BF009349
genomic: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
EST: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAG ATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
genomic: TATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtattttttt ... attttcacagATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGAAATTGACACTCTGACTGGAGATTTTCACACCAGAGTGGCAAACATATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGgtatttttttctataattttttattattaatttcagaatatacaaggaagtttattaaggatggagaaagaacactccagagaggacacaaattcctcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaga