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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCCCGCCAAAAGCGTTCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagaccttgtgtctctattaagtattaactctagatgcccttcttaacgccacattttgtatttagaaactgaagaaagttgagcagcatttttggtcctcag

Basic information

species Glycine max
transcript GLYMA13G40320.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193341109|gb|FK307945.1|FK307945
EST:     CCCATATCTTTCTTATTGGTTCAGATTCCGAGTAGAG                         GAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
genomic: CCCATATCTTTC-TATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
EST: gi|208261474|gb|GE059129.1|GE059129
EST:     TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAG                         GAAATGGAAGATGATG
genomic: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATG
EST: gi|208108927|gb|GD907639.1|GD907639
EST:     TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAG                         GAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
genomic: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
EST: gi|193653877|gb|FK595675.1|FK595675
EST:     AAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAG                         GAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
genomic: AAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
EST: gi|193345194|gb|FK309650.1|FK309650
EST:     TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAG                         GAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
genomic: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT