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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCATTAGAAATAGCTGCGCAACAGACCAAGTCCTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgttatgagatctaattccaaatatgccccatatttttcatttgagatatgtattcttatttgtgttggcctttcttttctctttaaattttcttattaatctcctatag

Basic information

species Glycine max
transcript GLYMA13G32940.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G129155_T01 (Zea mays), 5'ss of exon 13
---CACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCATTAGAAATAGCTGCGCAACAGACCAAGTCCTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgttatgagatctaattccaaatatgccccatatttttcatttgagatatgtattcttatttgtgttggcctttcttttctctttaaattttcttattaatctcctatag
   ||| || |||||||||||||||||||| ||||||||  | ||   |||   ||| ||    | |||  | |   |  |   | | ||    ||   ||||||||   ||||||         ||  ||  |    |  |||      |    ||| ||   |  |  | |  |  |   ||      || |||||   ||   |||           
AAACACGTCACACCCAAATTTTATTGGTGGCAGCAAGGCTGTTGAGCAAGCACAGCAGCAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAG---AAAGgtatgaatgttattgtcaaccgttataataacaatctgtatg----gtaatggatgtgacctgatggtagcat-agttgttaaggcgtccttaaagcatcac-tta-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193340691|gb|FK307108.1|FK307108
EST:     GCAACAGACCAAGTCCTCTTAGGGTTGCTATACCAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTTGAGAG
genomic: GCAACAGACCAAGTCCTCT-AGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgt ... tctcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCT-GAGAG
EST: gi|254339195|gb|GR847912.1|GR847912
EST:     CGCAACAGACCAAGTCCTCTAGGGTTGCTATACCAGTTTCTAGGCAAA-G                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAGAGAAGTGTGAAGTCT
genomic: CGCAACAGACCAAGTCCTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgt ... tctcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAGAGAAGTGTGAAGTCT