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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGTGCTGCATTTTGTTTTGGTGCCTTCTTATTCAGAAGCATGTATGGCTTCCTTGCTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGgtacattccttctattcaagtaatatctctttatgtttaatttctatattgaagtactaccctttttacatgcttatcatctatggatattttagcaact...

Basic information

species Glycine max
transcript GLYMA13G32670.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G64500.1 (Arabidopsis thaliana), 5'ss of exon 11
TATTGGTGCTGCATTTTGTTTTGGTGCCTTCTTATTCAGAAGCATGTATGGCTTCCTTGCTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGgtacattccttctattcaagtaatatctctttatgtttaatttctatattgaagtactaccctttttacatgctt-atcatctatggatattttagcaact
||| || ||   |||||| |||| ||| ||||  ||||  ||||||||||  ||  | ||||||||  || |||||||||||||||| |||||||| ||||||   ||    |   | | | ||||  ||| ||||||          |  || | |  | ||| | |  |  || || || | | |              
TATAGGAGCAATATTTTGCTTTGCTGCTTTCTGTTTCAAGAGCATGTATGCATTTTTAGCTCTTTTTGCTGTTGGTGAACTTCTTGTCTTTGCCACACAGgtaatctcgacttccaccattcatata-cttcatgttt----------tgcaaatccacctcttctgatttatttcatgatgtttag--------------

upper sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 10
TATTGGTGCTGCATTTTGTTTTGGTGCCTTCTTATTCAGAAGCATGTATGGCTTCCTTGCTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGgtacattccttctattcaagtaatatc-tctttatgtttaatttctatattgaagtactaccctttttacatgcttatcatcta--tggatattttagcaact
| | || ||   || ||| ||| ||||||| |  || |  ||| | ||||| ||||| ||||||||||| ||||||||| | || |||||||| |||||||||  ||| || |    |   || ||  | ||||  |||||||||  ||||  | ||  |   ||  ||||   | ||  |  |  |   || ||||| ||  
TTTCGGGGCAATATGTTGCTTTAGTGCCTTTTGTTTTAAGAGCCTTTATGGTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTCGTTTTTGCTACTCAGgtaatttcattatgagaatacaaaattgtttttaattttaatttcattattcta-tatcatatttgctacaatttcatgcttaacttttgtagtttagtaa--