Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTGTCTGGGTTATTCAGgtttgaatatacatctcaatttttttggaaagtggaaacacttagcactttgactgaacataaccaaagtacatgttcactttttttgtttgtttgcatacag

Basic information

species Glycine max
transcript GLYMA13G31830.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 12
ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTGTCTGGGTTATTCAGgtttg----------aatatacatctcaatttttttggaaagtggaaacacttagcact--------ttgactgaacataaccaaa---gtacatgttcactttttttgtttgtttgcatacag-------------------------------------------------------------------------
|| |||||||||||||||||||||||||||||| | ||| ||||| ||||  |||||||||| |||||  |          || | | |   |     |||   |   |   |     ||||| |        |    |  |  | |  |||     |||| |     |     || |  |   ||| |                                                                          
ATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGgtcagtcctgcgaataacaaatactccctccgtttcatattataagactttctagcattgcccatattcatatagatgttaataaatctagacatatgtgtctagaaagtcttataatataaaacggagaaagtatgtttttatgaaataaattctcaagtagtctatctgagccgttttgacatttgtgaatgcag

upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G041181_T01 (Zea mays), 5'ss of exon 12
ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTGTCTGGGTTATTCAGgtttgaatatacatctcaatttttttggaaagtggaaacacttagcactttgactgaacataaccaaagtacatgttcactttttttgtttgtttgcatacag
|| ||||||||||||||||||||| |||||||  | ||| ||||| | ||  ||||||| || |||||  |  |     | ||||   || |             | ||       |||   ||| | |       | |  |   |  ||||||   |   || | |||
ATATTCTACTTTGTTGGATTTGGACTGTTCTGTCTGGAATCATTGCTTAGCATCTGGGTCATCCAGgtcagttttctattatcaaccgttcta------------attt----tcctgaaccaacttcagtgtgacatacttgagccctttttg---gaccgcgtgcag