Sequence
atgc intronic sequence ATGC exonic sequenceCACTCCCACTGGAGTGGAGACACCTGATGTTATTGACCTTCGTAAGCAGCAGAGGAAGGAACCTGAAAAGCCTCTTTATCAAgtgagtgtttctatttctgctcttccatcagttttagctctttgatcatttgtttgtcattaaccatgtttttcatgaag
Basic information
species | Glycine max |
transcript | GLYMA13G25110.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G25110.2 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g58090.1 (Oryza sativa), 5'ss of exon 13
CACTCCCACTGGAGTGGAGACACCTGATGTTATTGACCTTCGTAAGCAGCAGAGGAAGGAACCTGAAAAGCCT------------CTTTATCAAgtgagtgtttctatttctgctcttc----catc---agttttagctctttgatca---tttgttt-gtcattaaccatgtttttcatgaag-----------
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CACTCCAACTGGTGTGGAAACACCTGATGTGATTGATCTTCGGAAGCTGCAGCGGAAAGAGCCTGAAAAGCAGACCGAGAAGCAACTATACCAGgtgaggactttgccttcaattgtttgtggcatctcaggatacagacctttaaattggttttgttcagtctataaccgacctttttgtcctttttctttgaag
upper sequence: GLYMA13G25110.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G132060_T02 (Zea mays), 5'ss of exon 12
CACTCCCACTGGAGTGGAGACACCTGATGTTATTGACCTTCGTAAGCAGCAGAGGAAGGAACCTGAAAAGC------------CTCTTTATCAAgtgagtgtttctatttctgctcttccatcagttt----tagctctttgatcatttgtttgtcattaaccatgttt--ttcatgaag
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TACTCCAACTGGTGTTGAAACACCTGATGTTATCGACCTTCGGAAGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGCTGTACCAGgtaagtagat--gtttgtggtattgctggggtttgtggtatctttgttaatatccattgctcatgttccttccttggcttctgaag
upper sequence: GLYMA13G25110.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G121354_T01 (Zea mays), 5'ss of exon 8
CACTCCCACTGGAGTGGAGACACCTGATGTTATTGACCTTCGTAAGCAGCAGAGGAAGGAACCTGAAAAGC------------CTCTTTATCAAgtgagtgtttctatttctgctcttccatcagttt----tagctctttgatcatttgtttgtcattaaccatgttt--ttcatgaag
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TACTCCGACTGGTGTTGAAACACCTGATGTTATCGACCTTCGGAAGCTGCAGAGGAAGGAGACTGACAAGCAGGCAGAACGGCCGTTGTATCAGgtgagtagat--gtttgtggtattggtggggtttgtggttactttgttaatattcattgcccatgtttcttccttggctcctgaag
upper sequence: GLYMA13G25110.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0818g00010.t01 (Vitis vinifera), 5'ss of exon 5
CACTCCCACTGGAGTGGAGACACCTGATGTTATTGACCTTCGTAAGCAGCAGAGGAAGGAACCTGAAAAGCCTCTTTATCAAgtgagtg---tttctatttctg----ctcttccatcagttttagctct-ttgatcatttgtttgtcattaaccatgtttttcatgaag-----------------------------------
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CACCCCAACTGGTGTTGAGACACCTGATGTTATTGACCTACGTAAGCAACAGAGGAAGGAGCCAGAGAGGCCACTTTATCAAgtgagtcaattatctgaaactggttatttttttgtctatttgtgctaaattgctaatattgttcctaatacctgtattaatgatttatttgtttctccattacctttttcttgttttcatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208123699|gb|GD922361.1|GD922361EST: CTTCGTAAAGCAGCAGAGGAAGGAACCTGAAAAGCCTCTTTATCAA GTACTTGAAGAGAAGGAGGAAAAAATTGCTCCAGGAACTTTGCTTGGAACT
genomic: CTTCGT-AAGCAGCAGAGGAAGGAACCTGAAAAGCCTCTTTATCAAgtgagtgttt ... tttcatgaagGTACTTGAAGAGAAGGAGGAAAAAATTGCTCCAGGAACTTTGCTTGGAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACTCCCACTGGAGTGGAGACACCTGATGTTATTGACCTTCGTAAGCAGCAGAGGAAGGAACCTGAAAAGCCTCTTTATCAAgtgagtgtttctatttctgctcttccatcagttttagctctttgatcatttgtttgtcattaaccatgtttttcatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA