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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTTGCTAACAATCACACTGGTGCAATATCATTTCTAATAGCCGATTTTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtcttagaaggtcttatttagtttttttcttttgtgcacaagaagttctctactttgatctgaagcacgtgccttttttttttttccctactactttcatgacacag

Basic information

species Glycine max
transcript GLYMA13G23230.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G23230.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 12
GTATGTTGCTAACAATCACACTGGTGCAATATCATTTCTAATAGCCGATTTTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtct-tagaaggtcttatttagtttttttcttttgtgcacaagaagttctctactttgatctgaagcacgtgccttttttttttttccctactactttcatgacacag
 |||| || ||   |||| | |||||| ||||| ||||| || |  ||||||||||||||||| ||||||  | | ||||||||||| || |||  |||||||||| | |||||  |   |  | |   |   || |     | |  || |  || | |  | |   |    |   | |||||  | ||   |||  |  ||          
TTATGCTGGTAGACATCATATTGGTGCTATATCGTTTCTGATTGTGGATTTTTTCCTCTTCTTTGGTGTGGCTGCCTTGACAGTTGTACAAGCTTCTCAGgtatgtgtctagaatcttccaact-gcagtaccctataaaaaaaataaaatcttccaat--ggtagtattttcaatcatttttcatattggactaagatattt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663023|gb|BI700394.1|BI700394
EST:     TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAG                         ATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
genomic: TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtctta ... catgacacagATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
EST: gi|23054538|gb|BU577626.1|BU577626
EST:     TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAG                         ATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
genomic: TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtctta ... catgacacagATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
EST: gi|15814634|gb|BI786909.1|BI786909
EST:     TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAG                         ATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
genomic: TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtctta ... catgacacagATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
EST: gi|298180896|gb|HO022335.1|HO022335
EST:     TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAG                         ATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
genomic: TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtctta ... catgacacagATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
EST: gi|58018760|gb|CX705502.1|CX705502
EST:     TTTTCCTCTTTTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAG                         ATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT
genomic: TTTTCCTCTTCTTCGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtctta ... catgacacagATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAAT