1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTGTGCACATATATGTTCATCTAGCCAGGGGTGACACGAATTCCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGgcaagttttgtgggacttttgatatactgcatactgttctcaagaatttttattttgtctgtattaccatataagcaaatgcaatctgactggtaattcgctgcag
species | Glycine max |
transcript | GLYMA13G05850.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAG TTGTTTAGTGCTGGGGCTGATGTTCTTCACAGAATTGGCGAGGATGGGAGAEST: gi|151399004|gb|EV268875.1|EV268875
genomic: CCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGgcaagttttg ... ttcgctgcagTTGTTTAGTGCTGGGGCTGATGTTCTTCACAGAATTGGCGAGGATGGGAGA
EST: AGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAG TTGTTTAGTGCTGGGGCTGATGTTCEST: gi|105633512|gb|DW246875.1|DW246875
genomic: AGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGgcaagttttg ... ttcgctgcagTTGTTTAGTGCTGGGGCTGATGTTC
EST: CCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAG TTGTTTAGTGCTGGGGCTGATGTTCTTCACAGAATTGGCGAGGATGGGAGAEST: gi|13312104|gb|BG405755.1|BG405755
genomic: CCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGgcaagttttg ... ttcgctgcagTTGTTTAGTGCTGGGGCTGATGTTCTTCACAGAATTGGCGAGGATGGGAGA
EST: CCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAG TTGTTTAGTGCTGGGGCTGATGTTCTTCACAGAATTGGCGAGGATGGGAGA
genomic: CCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGgcaagttttg ... ttcgctgcagTTGTTTAGTGCTGGGGCTGATGTTCTTCACAGAATTGGCGAGGATGGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTGCACATATATGTTCATCTAGCCAGGGGTGACACGAATTCCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGgcaagttttgtgggacttttgatatactgcatactgttctcaagaatttttattttgtctgtattaccatataagcaaatgcaatctgactggtaattcgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG