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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgttatctgtcttcctcattgtccttaatctctgacaaacttctctttaattttttttttgaactttgtgctctgtacag

Basic information

species Glycine max
transcript GLYMA12G37070.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G059893_T01 (Zea mays), 5'ss of exon 1
CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgttatctgtcttcctcattgtccttaatctctgacaaacttctctttaattttttttttgaactttgtgctctgtacag
                                       | || ||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||      |||  ||||    |          |||    | ||   | |      || ||||  |   | |       || ||| |||                                           
---------------------------------------CACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtatcatttatcctgc--------attgc-tctctacgtgtccatcaatatgtcaactaaactactacgtatttct-acag------------------------------------------

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 13
CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgttatctgtcttcctcattgtccttaatctctgacaaacttctctttaattttttttttgaactttgtgctctgtacag
| ||  ||||  ||||  |  |  | ||  | || || || || ||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||      ||| | |||    |          |||   | ||| | |   ||  |||  |||  |   | |       || ||| |||                                           
CGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgtttatcctgc--------attgctctcctgtgtccattaatat--gtcaactaaactactacctatttct-acag------------------------------------------

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 13
CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgttatctgt-cttcctcattgtccttaatctctgacaaacttctctttaattttttttttgaactttgtgctctgtacag
| || ||||| ||| |  || | || || || || ||||| |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||  ||     | |  || | |   |  | |           | ||||    || || |  |  || |||  ||  ||| |       ||    || || | || |   |                  
CAGAACATGTGCTTACCCTGATGATGCCGCTTCTCACTGCCCAACAACTGAACGTCCAACAGTTTGCCAAATATATGCTATTTGTCAAGGATATTCTCAGgtgtgcatcttgttatcagtcagtactt--ttgaatagtgttttcacgtccgtaccacaacagtgttgttg-tctttattgtgatttgtattcatctattgtaacag-----------------

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 13
CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgttatctgtcttcctcattgtccttaatctctgacaaacttctctttaattttttt-tttgaactttgtgctctgtacag
| || || || |||||  || ||||||| || || ||||| |||||||||||||| |||||||||||||||||||| || |||||||| ||||| |||  ||| ||  | |         |  |||   | |   || |||     |   | |   ||| ||        |    ||  |   || ||   |  |  ||| | |   || ||  | ||| ||||
CAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTATTTGTCAAAGATATTCTCAGgta-tacctcc--------gaccaatcctgtc---ctgtttccaagttcttattccccttataactgcatactgttgtaattgttttcaacatctggtttgtctatcctctggtcactgaacag

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 13
CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgt-tatctgtcttcctc-----attgtcctta-atctctgacaaacttctctttaattttttttttgaactttgtgct-ctgtacag---
|||||||||| |||||| | || | ||| || || | |||||||||||||||||||||||||||||| || || ||||||||||| |||||||| |||  ||| |||   ||  ||  |       |||   |  |||| || | |  || ||| ||| ||       ||| || | | | | || || | |     |  ||   ||  |    ||  ||||  | || |    
CTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgatt-gactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796793|gb|AW782187.1|AW782187
EST:     AATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCA                         CAAAATAGAAGAGAAGCGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
genomic: AATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatatttt ... ctctgtacagCAAAATAGAAGAGAAGCGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
EST: gi|7796790|gb|AW782184.1|AW782184
EST:     AATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCA                         CAAAATAGAAGAGAAGCGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
genomic: AATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatatttt ... ctctgtacagCAAAATAGAAGAGAAGCGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
EST: gi|151393211|gb|EV263086.1|EV263086
EST:     ATGCTCTTTGTCAAGGATATGCTCCA                         CAAAATAGAAGAGAAGCGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
genomic: ATGCTCTTTGTCAAGGATATGCTCCAgtaatatttt ... ctctgtacagCAAAATAGAAGAGAAGCGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA