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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAAgttcacacatgcccttcttttcatttatgatatttttcatctttaattatccaaatttatcgatttaattttggttactttctttctttgcag

Basic information

species Glycine max
transcript GLYMA12G36620.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36620.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 11
TTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAAgttcacacatgcccttcttttcatttatgatatttttcatctttaattatccaaatttatcgatttaattttggttactttct-ttctttgcag-----------
||| | || || || |||||||||||||  ||||||||||| || ||||||||||||| ||| || || |||||||||||| | ||||||||  |||||||| | |||    |           || |   | || |  |   | | | |  ||  || || |||  | |||| | ||    | ||| |||  |           
TTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccac----cacagaaaatgcttgtatcaattcttgtaacttaatgtttaa--ttctcaattccagtttgatgacaaattattccttgtgggtgatcctcag

upper sequence: GLYMA12G36620.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 12
TTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAAgttcacacatgccct-tcttttcatttatgatatttttcatctttaattatccaaatttatcgatttaattttggttactttctttctttgcag--
||||| ||||| |||||||| || ||||| || |||||||| || || || ||||||| ||| || || |||||||||||||| ||||||||  ||||||||  |   |  || | |   | |  | |  ||   |  |||     | ||   ||    |   |   ||||| | |||||| ||   |     |  
TTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctattaaccccttgtgcatgccataaaaatgcctgacatgcaagaatagggaatgagaataacagaatttggattacttactagatcaaatgaa

upper sequence: GLYMA12G36620.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S88_225V6.1 (Physcomitrella patens), 5'ss of exon 11
TTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAAgttcacacatgcccttcttttcatttatgatatttttcatctttaattatccaaatttatcgatttaattttggttactttcttt------ctttgcag------
|||||||||   |||||||||||||| |||||||| ||||| ||||||||  |  | ||||| || || || ||| | ||| | || |||||  ||| |||         | | | | |||||  || | | || | ||  | |  | ||  |  |||  |    |||||   || |  ||||        |  || ||      
TTTGTGGCTCTAACTCAACCAATCAACTCATTAGCATTTGTCTTTGATGGCATTCATTATGGAGCGTCAGACTTTCCTTATGCTGCTTACTCAATGgtaag---------ggcttccgtttcaagtaggctgttgtacacttgtcttcatgaatgttttgcatgataattcacgtcaacttctaaagaaaaccatgaagcgtaaa