Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGCAAGTAGGCAAAGATCAGATATCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTAAGGCCCCGCCCAAATCTTCCTTCAGATTCCGAGTAGAGgtattagaccttgtgtctctattaagtattaactctagatgcccttcttaacgccacattttagaaactgaagaaagttgagcagcatttttggttctcag

Basic information

species Glycine max
transcript GLYMA12G29270.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31471144|gb|CD413172.1|CD413172
EST:     AAACGTTCAGTAAGGCCCCGCCCAAATCTTCCTTCAGATTCCGAGTAGAG                         GAAATGGAAGATGATGTGGTCTGAGGCACCTCTTGGTATTGTTTCCCCATT
genomic: AAACGTTCAGTAAGGCCCCGCCCAAATCTTCCTTCAGATTCCGAGTAGAGgtattagacc ... tggttctcagGAAATGGAAGATGATGTGGTCTGAGGCACCTCTTGGTATTGTTTCCCCATT
EST: gi|193412672|gb|FK376895.1|FK376895
EST:     TCAGATTCCGAGTTAGTAG                         GAAATGGAAGATGATGTGGTCTGAGGCACCTCTTGGTATTGTTTCCCCAT
genomic: TCAGATTCCGAG-TAG-AGgtattagacc ... tggttctcagGAAATGGAAGATGATGTGGTCTGAGGCACCTCTTGGTATTGTTTCCCCAT
EST: gi|193729477|gb|FK664325.1|FK664325
EST:     GCCCCGCCCAAATCTTCCTTCAGATTCCGAGTAGAG                         GAAANGGAAGATGATGTGGTCTGAGGCACCTCTTGGTATTGTTTCCCCATT
genomic: GCCCCGCCCAAATCTTCCTTCAGATTCCGAGTAGAGgtattagacc ... tggttctcagGAAATGGAAGATGATGTGGTCTGAGGCACCTCTTGGTATTGTTTCCCCATT