Sequence
atgc intronic sequence ATGC exonic sequenceAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACgtattctctctaaactccttgacatccatttcattctttaaatatatcatgcactctatctcacacacacaaggagggaggggtttggaagtgtcatttttttttaatttttttaaaaaaaataggaatctaggcttgatgttcttaaacttccttgttacatttacag
Basic information
species | Glycine max |
transcript | GLYMA12G09860.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G09860.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g33430.2 (Oryza sativa), 5'ss of exon 12
AGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACgtattctctctaaactccttgacatccatttcattctttaaatatatcatgcactctatctcacacacacaaggagggaggggtttggaagtgtcatttttttttaatttttttaaaaaaaataggaatctaggcttgatgttcttaaacttccttgttacatttacag
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ACTGATGCTGATTACTGGCTCATATCAGAAGGGGATGTCAGCATTACTGATATGTGGAAAACAGCACgtatcctttatgatc--------gttcattacact-tttgtttggactattcatagttttgtttagaagtcatttgtaacttataagtagctactgttgcaacttgaagtacttaacatggaaacag------------------------------------------
upper sequence: GLYMA12G09860.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G041701_T01 (Zea mays), 5'ss of exon 13
AGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACgtattctctctaaactccttgacatccatttcattctttaaatatatcatgcactctatctcacacacacaaggagggaggggtttggaagtgtcatttttttttaatttttttaaaaaaaataggaatctaggcttgatgttcttaaacttccttgttacatttacag
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ACGGATTCTGATTACTGGCTCCTAACAGAGGGGGATGTTAGCATGACTGATATGTGGAAAACAGAACgtatccttgataatc--------attcattaagctggtttaaaat--catctgttctgttatgta----------------gttgttacagcttgatgttctt--aacattaaaaataaaag-----------------------------------------------
upper sequence: GLYMA12G09860.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G041701_T02 (Zea mays), 5'ss of exon 13
AGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACgtattctctctaaactccttgacatccatttcattctttaaatatatcatgcactctatctcacacacacaaggagggaggggtttggaagtgtcatttttttttaatttttttaaaaaaaataggaatctaggcttgatgttcttaaacttccttgttacatttacag
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ACGGATTCTGATTACTGGCTCCTAACAGAGGGGGATGTTAGCATGACTGATATGTGGAAAACAGAACgtatccttgataatc--------attcattaagctggtttaaaat--catctgttctgttatgta----------------gttgttacagcttgatgttcttaacatt-----aaaaataaaagaagcgcag------------------------------------
upper sequence: GLYMA12G09860.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0080g01110.t01 (Vitis vinifera), 5'ss of exon 13
AGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACgtattctctctaaactccttgacatccatttcattctttaaatatatcatgcactctatctcacacacacaaggagggaggggtttggaagtgtcatttttttttaatttttttaaaaaaaataggaatctaggcttgatgttcttaaacttccttgttacatttacag
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AGTGATGCAGATTACTGGCTTTTGTCAGATGCCGATGTGAGCATCACAGACATGTGGAGGACAGAGCgtatcctctcaataatatattgcgt--attt---tctttttatctactttcctcatctttatttacgtgcaagtacaaagttccttg--actctcaaccacag------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13791357|gb|BG653948.1|BG653948EST: GCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAAC CTGGAGTTGAATGGAATGAACTGGA
genomic: GCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACgtattctctc ... acatttacagCTGGAGTTGAATGGAATGAACTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACgtattctctctaaactccttgacatccatttcattctttaaatatatcatgcactctatctcacacacacaaggagggaggggtttggaagtgtcatttttttttaatttttttaaaaaaaataggaatctaggcttgatgttcttaaacttccttgttacatttacag
- - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA