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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTGCTCAATTTCTGCCTTGGACAAAAGTTCAGATGATTACGAGATGATTGTGAAATACCTTGAAAAAACTTATGAGCCGGTCAAAGTTGGTGACATTgtaagataagaacttcctgctttgtgtgttttatgcaaccatgcgcatatcttgttgagtatttacttccaatgaacttcag

Basic information

species Glycine max
transcript GLYMA12G09390.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09390.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0080g00260.t01 (Vitis vinifera), 5'ss of exon 12
GGGTTGCTCAATTTCTGCCTTGGACAAAAGTTCAGATGATTACGAGATGATTGTGAAATACCTTGAAAAAACTTATGAGCCGGTCAAAGTTGGTGACATTgtaagataagaacttcctgctttgtgtgttttatgcaa--ccatgcgcatatcttgttgagtatttacttccaatg----aacttcag-----------------
 ||||||||||| ||  |  |||| |||    | ||||| ||   ||||||  | |||||||| || ||||||||||| || |||||||||||||| |||||||| |      || ||    ||   | ||  |  ||  || ||  |  | |  ||   |    |  ||||| |        ||  |                 
AGGTTGCTCAATATCCCCACTGGAGAAAGACACTGATGACTATAGGATGATCCTCAAATACCTGGAGAAAACTTATGAACCTGTCAAAGTTGGTGAAATTgtaagttgtacctttactctaatgcaagattagtcaaattccttgtccccaaca-gtcatgaccctctttccatttttgtggttttggtgatctctgttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730596|gb|BM525966.1|BM525966
EST:     TGTGAAATACCTTNGAAAAAACTTATGAGCCGGTCAAAGTTGGTGACATT                         GAATATGGGGTGTCAGTGGAAAACATTTTTGCGGTTCAAACAGGTGGTTGC
genomic: TGTGAAATACCTT-GAAAAAACTTATGAGCCGGTCAAAGTTGGTGACATTgtaagataag ... tgaacttcagGAATATGGGGTGTCAGTGGAAAACATTTTTGCGGTTCAAACAGGTGGTTGC