Sequence
atgc intronic sequence ATGC exonic sequenceCTGCCGTTGTGTTGGGGGTGGAAATGCAGTTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTGTCAACCTTCGTTGTCCTgtatggctttcatcaatagatgaattattttagcaattcatgaagtcctactaatcagttttttatttttggtgaaaattttag
Basic information
species | Glycine max |
transcript | GLYMA12G07590.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07590.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g03430.3 (Oryza sativa), 5'ss of exon 8
CTGCCGTTGTGTTGGGGGTGGAAATGCAGTTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTGTCAACCTTCGTTGTCCTgtatggctttcat-----caatagatgaattattttagca---attcatgaagtc----ctac--taatcagttttttatttttggtgaaaattttag--
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TCGGCGCTGTCTCGGAGGTGGAGACACTGCAGAGAATGCTGATAGTGACAGTGATTTGGAAGTGGTTGCGGAGTCTGTTACAGTCAACCTTCGTTGCCCTgtgagtttttgttacgtataactgtttagttagcttaacatatgtttgttaagtgtacactacagtatgcagatatagtcattctatcaggttattgatg
upper sequence: GLYMA12G07590.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0004g03180.t01 (Vitis vinifera), 5'ss of exon 12
CTGCCGTTGTGTTGGGGGTGGAAATGCAGTTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTGTCAACCTTCGTTGTCCTgtatg-------gctttcatcaatag-----atgaattattttagca-attcatgaagtcctactaatca-gttttttattttt--ggtgaaaattttag
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TCGTCGTTGCATTGGTGGTGGAGGTGCAACTGATAATGCTGATAGTGACAGTGACCTGGAAGTGGTTGCAGATTTCTTTACTGTCAATCTACGATGTCCTgtaagtaatgctgtgtgtgtgaaaaacaaccatgcatcatctttatatattcaaatatgttgagcaatcaagctatgcactgtcccaaaggaaatatcacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23729846|gb|BU763027.1|BU763027EST: GTGATTTGGAAGTGGTTTCAGATACTTTCACTGTCAACCTTCGTTGTCCT ATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTTAAACCCTGTATTCAC
genomic: GTGATTTGGAAGTGGTTTCAGATACTTTCACTGTCAACCTTCGTTGTCCTgtatggcttt ... aaaattttagATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTTAAACCCTGTATTCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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CTGCCGTTGTGTTGGGGGTGGAAATGCAGTTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTGTCAACCTTCGTTGTCCTgtatggctttcatcaatagatgaattattttagcaattcatgaagtcctactaatcagttttttatttttggtgaaaattttag
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