1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattcttttttatacaaaagtattactgctgcttacaacaatcttttagatgttaccatggataatgtagttataattttttttctcctatctgcag
species | Glycine max |
transcript | GLYMA12G03640.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GAGAATTGTGGAAG ACTGAGACACTAGCTGATCATAT-AAATTTGA-CATGGTTATACTGCCAAGEST: gi|9259017|gb|BE347164.1|BE347164
genomic: GAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|15815265|gb|BI787540.1|BI787540
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|192301647|gb|FG997603.1|FG997603
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|192314633|gb|FK008141.1|FK008141
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|192327460|gb|FK017817.1|FK017817
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|9899529|gb|BE608497.1|BE608497
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATCGTGGAAG ACTGAGACACTAGCTGATCATATAAATTTTGACCATTGGT-ATACTGCCAAEST: gi|51335365|gb|CO979231.1|CO979231
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCAT-GGTTATACTGCCAA
EST: GCGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|254331304|gb|GR845883.1|GR845883
genomic: GCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|192314634|gb|FK008142.1|FK008142
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattcttttttatacaaaagtattactgctgcttacaacaatcttttagatgttaccatggataatgtagttataattttttttctcctatctgcag
- - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG