Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag

Basic information

species Glycine max
transcript GLYMA11G35460.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 13
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
|||  | ||||||||||| || || || || || || ||||||||||| ||||||||||| |||||||| ||||||||||| || ||||| || ||||||||| |   ||||| | ||||  |  ||| || |||||      |  || |  |  |   |  | |       |    |||||   ||      |  ||                                                                                                    
TGCTCTGAAAATATACATAAAGGCTAGGGCAACCCCTAAAGTTGTTGCCGCTTTTGCTGAAAGAAGGGAATTTGACAAGATCCTTATATATTCAAAGCAGgtata--tttgttca-gtattgatgaatcctcattttcagctgtaagagt--tcagctttgatgtaaactgttggcctaatacatttgctgttt-cag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 13
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
|||  | ||||||||||| || || || || || || ||||||||||| ||||||||||| |||||||| ||||||||||| || ||||| || ||||||||| |   ||||| | |||   |  ||| || |||||      |  || |  |  |   |  | |       |    |||||   ||      |  ||                                                                                                    
TGCTCTGAAAATATACATAAAGGCTAGGGCAACCCCTAAAGTTGTTGCCGCTTTTGCTGAAAGAAGGGAATTTGACAAGATCCTTATATATTCAAAGCAGgtata--tttgttca-gtactgatgaatcctcattttcagctgtaagagt--tcagctttgatgtaaactgttggcctaatacatttgctgttt-cag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 11
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgtt-catctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
|||  | |||||||||||||| ||||| || || || ||||||||||||||||||||||| || |||||||||||||| || || ||||| || |||||||||   | ||| ||  ||       ||  |   |||| |||  | ||||     |||  ||| | || |  |                                                                                                                               
TGCACTGAAAATATACATCAAGGCCAGGGCAACCCCTAAAGTTGTTGCTGCTTTTGCTGAAAGGAGGGAGTTTGACAAAATACTTATATATTCAAAGCAGgtat--gtttgctttggttatgtggaagtccttttttagttatacctgacc---ttgaacttttgttttccag------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 2
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
|||  | ||||||||||| || || || || || || ||||||||||||||||||||||| || ||||||||||||||||  ||||||||||| ||||||||      || |||   | |  | | || ||| |||  |||  | | | || |||| ||||| | | |||  ||||  ||  | |||      |    |   |  |                                                                                            
TGCACTGAAAATATACATAAAGGCTAGGGCAACCCCTAAAGTTGTTGCTGCTTTTGCTGAAAGGAGGGAGTTTGACAAGACACTGATATACTCAAAGCAGgttcg---ttatttggtttt--attgattctgttttcagttgttgtaactcatttgagcttcacattttat-ttctacaacttggttccaggttgggtacactcca--------------------------------------------------------------------------------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 7
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
                            |  || || |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||||||||      || |||   | |  | | || ||| |||  |||  | | | || |||| |||||   | |||  ||||  ||  | | |                                                                                                               
----------------------------GGCACCCCTAAAGTTGTTGCTGCATTTGCTGAAAGGAGGGAGTTTGACAAGATACTGATATACTCAAAGCAGgttcg---ttatttggtttt--attgattctgttttcagttgttgtaactcatttgagcttcaaattttat-ttctacaacttgggtccag-----------------------------------------------------------------------------------------------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 13
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgttcatctgatt-cttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
|||  ||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| |||||||||||||||| ||  |||| || || ||||||||| |       ||| || | |||   | |     |  |||  | || || |  |   | |  |  || | ||        ||   || |    | | | |  | ||                                                                                            
TGCTCTAAAAATATACATCAAAGCTAGAGCTACTCCAAAAGTCGTTGCAGCTTTTGCAGAGCGAAGGGAGTTTGACAAAATATTGATTTATTCAAAGCAGgtaaa----caattaagttttaaagtttgccc-cctccgttgttatgtttaccctaaaggtcattgtgctcaa----gaggtaccattgttttatgttgtgactctag-------------------------------------------------------------------------------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 13
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
 ||  | |||||||||||||||||  | || |||||||||||||| || |||||||| || ||||||||||||||||| || ||||| ||||| |||||||||     |     || |||   ||||       | || ||       ||    |    |||| ||||   ||   |||  ||||||      ||| | |  || |                                                                                            
CGCTCTGAAAATATACATCAAAGCTCGGGCGACTCCAAAAGTTGTAGCAGCTTTTGCAGAAAGAAGGGAGTTTGACAAAATACTGATTTACTCAAAGCAGgtaagcaataa--gatctatagtataacctcttctattattt------ttaccctaaagttctgttgtctcatgaattaccattgtttca---tattgtgacttcag-------------------------------------------------------------------------------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 13
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtaga-agcttg-tttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
|||  | |||||||| || ||||| ||||| ||||| ||||||||||| || ||||||||| |  ||||||||||||| |||||||||||||| ||||||||  | ||| || | || || |    |    || |       | || || || |||| |  || || ||| |||||  ||        | | | || |      |||        | ||| | ||| |||  ||   |    | ||    ||  | ||  ||  ||||  |     | ||| |  || |           
TGCACTCAAAATATATATTAAAGCGAGAGCAACTCCGAAAGTTGTTGCAGCCTTTGCTGAGCGTCGGGAGTTTGACAAAATTCTGATATACTCAAAGCAGgtgaatagcatgatctaggttttcgttgcctcttaaacaaaat-atatgttttttttct--ttttcctgtaaaatttgtt--------tcttatctgttactacttt-------ttttatcagtaatattttattattgaattatgggcatt--tagagtaa-ctgtgttt-----tcttcgtcgctgtag---------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 5'ss of exon 14
TGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGgtagaagcttgtttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctt-tgcattttactggaacaaattgtggctgatcattttcattactttttccgctacag
 || || ||||| ||||| || ||||| ||||| || || || ||||| |||||||||||| |  | |||||||| ||||||||||| ||||| ||||||||      |  |  |  |||   ||    ||     |  ||||     | ||||  | | | |    ||  |||      ||||   ||  ||| |      |||    ||       ||   |||   | | | |||  |   ||| |||        | | ||| |                               
GGCTTTGAAAATTTACATAAAGGCCAGGGCTACACCCAAGGTGGTTGCAGCTTTTGCTGAGCGGCGAGAGTTTGATAAGATTCTGATTTACTCCAAGCAGgttagtcatgctcaaaatatttgatggctcttggcct--ttcacaacgtgctttgtttcctttggcattgcatttcagggtatt-caattgcctttctt--ctttgtgcgggggagcaaacctacac-acgtgtattgtttgacgcagtttttcc---tacactgtag-------------------------------