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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

Basic information

species Glycine max
transcript GLYMA11G27410.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| || || |||||  | ||||||||||| || |||||||| |||||||| || |||| ||||||||||||| | |||| ||| ||||||||||| ||||| | ||| ||||||       |||  ||| |||||   | | |  | |  | | | |     |    | || |||||  |||| || |   |        | |   | || |||  |||
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgt-gattatattctt-------ttc--ctgattaattgttttgccacaa--tggcgtatgttggattgtttggcaagt--gaac-ataactctcttttggttgaaactcgg-tgt-gcag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 6
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaaca--tcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| ||  |||||||  | ||||| || || || || ||||| |||||||| || ||||  |||||||||||| | || ||||||||||||||||| |||||     | |   | | |   |  || || || ||  ||| ||| | | |   |||  ||  | |     | | | | || | || | |                                 
GTTGGGTTGCCAGCTCGTGGTAAGACCTTTACAGCGGCTAAGCTTACAAGGTACCTTCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgcgcaatagcttaagctgtttctttatatgattgctca-tattcatggtattagc-cactaatcatgttttcttacgtttcaattgtag-------------------------------

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM5G824405_T01 (Zea mays), 5'ss of exon 7
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| || || |||||  ||||||| || || || ||||||||||||||||||||||| |  |||||||||||| | || ||||||||||||||||| |||||                || ||| |   | |||| | |   | || |   ||| | |||| || |  | |||   ||||     || | | ||       |  ||| | |         
GTTGGGCTACCAGCTCGAGGTAAGACCTTTACAGCAGCTAAACTTACAAGATATCTCCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtg---------------ataattta---gcttaagcta---attttg---tagag-aaaattgcatgtgtgtatggtatcgctaatcatgtttgctattttgttttctag---------

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| || || |||||  | |||||||| |||||||||| ||| |||||||| || |||| |||||| || ||| | || | ||| |||||||||||||||||  || | ||| ||| |  |  | | |||| |     |  || |  |      |     | | | || ||   || |  |   | |   | | ||   |  | |               
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaatt-atattgtta-ctccgattaactgtcttgcagagttaatgtgtttacttttcttatttgcaaaat--taattgagttttcttttgttgaaaatatgtgtgcag-----------

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| ||  |||||||  ||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||| | |||||||||||||||||||| |||||  |||| ||| ||||  | |||||||      | |  ||  | | ||  |   | || | ||  |  |  |   ||   |||                                    
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcac----agctctaatcattgaagtgagg-aagattgatatgacttttggttgtaacag----------------------------------

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S215_89V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgt-tgttt-------acattcttaacatcattcatctgtttaatcaatatacttc--gacctagt-gcaaaact--ggaa-----atatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag--------------------------------------------------------
|| ||  | || ||  | || || || ||||||||||||||||| || |||||| | |  |||||||||||| | ||||| |||||||||||||| ||||| |||||       || || |   || |     ||  | |  ||||  || |||  |   | || |||  | |  || |     |||| |   |||   | |||  |   |  | |  | |  |||     | | ||                                                        
GTTGGGTTACCGGCTCGTGGAAAGACATTCACTGCAGCTAAACTGACCAGATATTTGCGGTGGTTAGGTCATGACACCAAGCACTTCAATGTTGGCAAGgtatgtttttagaaaactttgtacgcagctggtgtcaatcttctcaacttatttcttgttttggttgcatgattttgggatgattatattttgtgtacccaatatctaaggtg-ctctttcaggttttagccttagagtgcacactttttgcagtggagtattttgatgcgattgtgcttttgatgtttcacag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ07288 (Selaginella moellendorffii), 5'ss of exon 3
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttta--cattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|||||  | ||||| || || |||||||||||||| |  || || ||||||||||||| |||| | |||||| | || ||||||||||| ||||| || ||   | |  || | |     || |  |    | | |    | |  |  ||  |     |  |                                                           
GTGGGCTTACCAGCAAGGGGGAAAACTTTCACTGCTGTCAAGCTAACAAGATATCTTCGTTGGCTTGGTCATGACACTAAACACTTCAACGTTGGAAAAgtcagtcagtcactttgtttgtcttgaagggctctcaggtttttggtgtgatttttcttaccag----------------------------------------------------------