Sequence
atgc intronic sequence ATGC exonic sequenceAGGCTCTGGGGCATGTCCTCCCTTTGATGAATTTATTAAAAGGTGTCAAGACCTTGAAAAAACAACAGTTAGTGATGTATTTGCCATGCAGCTTATGCAGgtattaacaatttaaaaattaaattttatctgtttttctattggtcgtttagtttgtctgactaaattaaatccagtgaccttgagtatctttttaattt...
Basic information
species | Glycine max |
transcript | GLYMA11G20970.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G20970.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G30870.1 (Arabidopsis thaliana), 5'ss of exon 13
AGGCTCTGGGGCATGTCCTCCCTTTGATGAATTTATTAAAAGGTGTCAAGACCTTGAAAAAACAACAGTTAGTGATGTATTTGCCATGCAGCTTATGCAGgtattaacaatttaaaaattaaattttatctg-tttttctat-tggtcgtttagtttgtctgactaaattaaatccagtgaccttgagtatctttttaattt
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AGGCGCAGCCTCATGTCCTTCTTTTGATAGTTTTGTCAAAAGGTGTCAAGACCTTGATAAAATGACAATCAGCGATGTATTTGCCATTCAGCTAATGCAGgtacgagtcct------gctaagccttatttggttcttatatgtgaggatccaattcgactga-taagttctctgcaacttttccaaaaccttctgttgcag
upper sequence: GLYMA11G20970.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0019g01290.t01 (Vitis vinifera), 5'ss of exon 13
AGGCTCTGGGGCATGTCCTCCCTTTGATGAATTTATTAAAAGGTGTCAAGACCTTGAAAAAACAACAGTTAGTGATGTATTTGCCATGCAGCTTATGCAGgtattaaca--atttaaaaattaaattttatctgtttttctattggtcgtttagtttg-----tctgactaaat-taaatccagtgaccttgagtatctttttaattt
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AAACACTAGCGTCTGTCCTCCTTTCAATGAATTTATTAGGAGTTGCAATGGCCTGGATAAGATGACAGTCAGTGATGTATTTGCCATTCAACTCATGCAGgtattaactctacttgaatgataagaatcctttgatgtgaagaaaatcatatggccaacaaattatgactgcatgtaaatgatgtaataaggaaaacata--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51343470|gb|CO984203.1|CO984203EST: ACCTTGAAAAAACAACAGTTAGTGATGTATTTGCCATGCAGCTTATGCAG GTCCCCCAAGTTACGGAGGAGGTTGCCATGGCTGTGTTGGATTTGTTCCCC
genomic: ACCTTGAAAAAACAACAGTTAGTGATGTATTTGCCATGCAGCTTATGCAGgtattaacaa ... gcaaatgcagGTCCCCCAAGTTACGGAGGAGGTTGCCATGGCTGTGTTGGATTTGTTCCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCTCTGGGGCATGTCCTCCCTTTGATGAATTTATTAAAAGGTGTCAAGACCTTGAAAAAACAACAGTTAGTGATGTATTTGCCATGCAGCTTATGCAGgtattaacaatttaaaaattaaattttatctgtttttctattggtcgtttagtttgtctgactaaattaaatccagtgaccttgagtatctttttaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa