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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATAGTGTTTTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTgtaagccttctttttttttaccttctgtcctcactgcattaaacataacgtttttctgcctaaactttatgcaaaataccttgtcag

Basic information

species Glycine max
transcript GLYMA11G18930.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 13
AGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATAGTGTTTTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTgtaagccttctttttttttaccttctgtcctcactgcattaaacataac----gtttttctgcctaaactttatgcaaaataccttgtcag------------
|| |  || || |||||| | || ||  |||| || |  || || || |  ||||| || || || || ||  |  |||||||||||||||||||||| ||||||   |   |  |||||| || |||  |   ||  || |  |  ||     || ||||    |||     |||| ||  |||                  
AGCGAGAGCCCAATATTTCTTCTCGACACATTTACCAACCTTATTGTTTACTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaag---tacatggttttacattttgttgtgcatgttttgagtactacatatattcttctaaaaaaatgaattgcataaagcctcaaagaatattatttggt

upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G27460.1 (Arabidopsis thaliana), 5'ss of exon 13
AGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATAGTGTTTTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTgtaagccttctttttttttaccttctgtcctcactgcattaaacataacgtttttctgcctaaactttatgcaaaataccttgtcag
||||| ||||||||||||||||| |||||||  || | | ||||||| || || || || |||||||||||| |  | ||||| |||||||| || || ||||||  ||||       |    ||       ||  | || |       |    | ||     | |  |      ||| |||  |||
AGTGGTAGTCCGATATTTTTCCTAGATGCATATACCACTTTGATAGTCTTCTACTCATCAACAGCAGACCCGTCAATACCTTTCCCTCCACCTCAAGACTgtaagttttctcaccaaatgaaatccagttcaaccacctttagatctttgagactatgtt--gattcgaaaacttatatctta-cag

upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 13
AGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATAGTGTTTTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTgtaagccttctttttttttaccttctgtcctcactgcattaaacataacgtttttctgcctaaactttatg----caaaataccttgt----cag
||||| || || ||||||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||| |  |||||||  || ||||| ||||||||||||     |||  || |  || |   | |     || || |  |  |     |  | |  || || ||     | ||||  ||| |    |||
AGTGGTAGCCCAATATTTTTCCTCGATGCATTCACAACTCTAATTGTGTTTTATTCTTCAACAGCAGACCCTATACTTCCTTACCCCCCACCTCATGATTgtaagttgattttaattgttgctgcctccatagaaccaatatagttttcaaaactgggacagaatttgattttgtctaaatgtcttctactacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7690867|gb|AW759004.1|AW759004
EST:     TTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATT                         GTTTGTTAAGGACTACAATCAACAAATTGAAGCAGGAGAGATGCATCACTC
genomic: TTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTgtaagccttc ... accttgtcagGTTTGTTAAGGACTACAATCAACAAATTGAAGCAGGAGAGATGCATCACTC