Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTAGTGTCACATTTGACTTGCTGTTGCTACTAGTATTGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctatttatcatctaacatcattttcaaaactttagttatccgatttgtatgcactcaatcttaatgatgctgtttgacag

Basic information

species Glycine max
transcript GLYMA11G18710.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18710.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 13
GTTGCTAGTGTCACATTTGACTTGCTGTTGCTACTAGTATTGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctatttatcatctaacatcatttt-caaaactttagttatccgatttgtatgcactcaatcttaatgatgctg--tttgacag---------------------------------------------------------------------------
||||||||||| |||||||||||  ||||||| |||||  ||||||| |||||||| ||||||||||| ||  | |||||||| ||||||||||    |  |    |  ||  |  |  || | ||||  || |||  |   | |    |  ||  | || |||     ||| |||                                                                            
GTTGCTAGTGTAACATTTGACTTATTGTTGCTCCTAGTGCTGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctcttttctttccaaaacctagcatatcttttattttccc-taaatgtctgtttcataatgatcatgtgtacttttacaaattagtgcccttgtagactgaatggaatggaaaaataaaagtaatctaaacattctaacaatgctattgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720189|gb|BW674527.1|BW674527
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|151401231|gb|EV271045.1|EV271045
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|18733631|gb|BM527732.1|BM527732
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|213597888|gb|DB958269.1|DB958269
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|17400577|gb|BM177359.1|BM177359
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCT
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCT
EST: gi|58023069|gb|CX709810.1|CX709810
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|254333372|gb|GR850622.1|GR850622
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|10848066|gb|BF070623.1|BF070623
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATT
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATT
EST: gi|33388989|gb|CA852196.1|CA852196
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|254343175|gb|GR859337.1|GR859337
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|57574504|gb|CX547479.1|CX547479
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|12773221|gb|BG238148.1|BG238148
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG