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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccacgtgtcttttatcttgtggttgaatgtactattgagcttcatcatttggttctttaaatggattttttttatatttacaaaactacctttt...

Basic information

species Glycine max
transcript GLYMA11G15900.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15900.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 5'ss of exon 13
GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccacgtgtcttttatcttgtggttgaatgtactattgagcttcatcatttggttctttaaatggattttttttatat----ttacaaaactacctttt---
 || ||||||||||| || ||  || ||||||| ||||||||| ||||||||||||| |      |  | | ||||  |   | | | | |  |  || ||||  |  | |      | ||||   |  | | ||| |    |||  ||| |     |    
ATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCCAAAGgttc-----tggatatcttattcttcagcttattat--ttgtgtgctttctgttcttcaaagtgaaatatttcctctctatttgatgttattaaattgatcatggaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699170|gb|BW656185.1|BW656185
EST:     ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|209712355|gb|BW671207.1|BW671207
EST:     GGATTGTGACAACGGAAAAGTTGCCCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: GGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|213613458|gb|DB974627.1|DB974627
EST:     ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGTTTGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|16995570|gb|BM084942.1|BM084942
EST:     ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|193340854|gb|FK307131.1|FK307131
EST:     TAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: TAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|31476129|gb|CD418157.1|CD418157
EST:     ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|13478283|gb|BG507821.1|BG507821
EST:     CGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACNCAGGTTGCT
genomic: CGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|208119311|gb|GD914220.1|GD914220
EST:     ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|254338024|gb|GR849656.1|GR849656
EST:     ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|9901994|gb|BE610962.1|BE610962
EST:     GTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: GTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|10255205|gb|BE822971.1|BE822971
EST:     ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
genomic: ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT
EST: gi|254338023|gb|GR849655.1|GR849655
EST:     ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG                         GATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAG-TTGCT
genomic: ATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAGgtccatccac ... gctgtttcagGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCT