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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGAAGATGTCCATTCTGCTGGGTGTGGTCCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAGgtgctcacttttcttccaaattctcccagcagtttttgttttgctttcctttgagtagaacgttataacttaatcttcataatgcttttag

Basic information

species Glycine max
transcript GLYMA11G15730.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 13
AGATGAAGATGTCCATTCTGCTGGGTGTGGTCCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAGgtgctcacttttcttccaaattctcccagcagtttttgttttgctttcctttgagt---agaacgttataacttaatcttcataatgcttttag
| ||||||||||| ||| || ||||||||   || |||||| | |||||| | |||||||| || ||||| ||||||||||| | |||  |||||||||||||     || |||  |   ||| | |  | ||   | | |   | |     |||    ||||   |  |||||| | |      || | | ||
AAATGAAGATGTCTATTTTGTTGGGTGTGACACAGATGAACCTAGGAATTGTGTTAAGTTACTTTAATGCACGTTTCTTTGGAAGCTCATTGGATATAAGgtgt---gttctctgtccctttccctccactgtcgctctgtacatctgaagggaggtagagaatagtgaaacttattgtctgctttgttatcag

upper sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 13
lower sequence: EDP04117 (Chlamydomonas reinhardtii), 5'ss of exon 17
------------------AGATGAAGATGTCCATTCTGCTGGGTGTGGTCCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAGgtgctcacttttcttccaaattctcccagcagtttttgttttgctttcctttgagtagaacgttataacttaatcttcataatgcttttag
                  |||||||||||||||| |||||||||||||  ||||||||| |||| ||  |  |        ||||       | |||  |   |   |||  |     |||  |   |   |       |      |  |     |  | | |       | |  | ||       ||   |    ||  ||  |    
CCTTCCTGAACTCGATGAAGATGAAGATGTCCATCCTGCTGGGTGTGGCTCACATGAACCTGGGCATCATCATGTCGCTGCTCAACAACAACTACTTCAGgtgcgg-ctgtgtgc---gtgggcgtgtgggtgggtgggtgggtgggtggggcgggggtgggtgagtggaggggcggactgggcggctgggtgg--atggtgggtg---

upper sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 13
lower sequence: EDP01931 (Chlamydomonas reinhardtii), 5'ss of exon 10
------------------AGATGAAGATGTCCATTCTGCTGGGTGTGGTCCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAGgtgctcacttttcttccaaattctcccagcagtttttgttttgctttcctttgagtagaacgttataacttaatcttcataatgcttttag
                  ||||||||||||| ||||||||||||||||  ||||||||||| || ||  |          | |||    |  | |||  |    | ||| | |      | ||| |   |    ||   |  |   | |||     |  |    ||||  |   |   | | | |   |   |  ||   |   |  ||
CCTATTTGAACAGTATGAAGATGAAGATGTCGATTCTGCTGGGTGTGGCGCACATGAACTTCGGTATCATCAACTCGCTCTACAACAACCTGTACTTCAG-

upper sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ20446 (Selaginella moellendorffii), 5'ss of exon 12
AGATGAAGATGTCCATTCTGCTGGGTGTGGTCCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAGgtgctcacttttcttccaaattctcccagcagtttttgttttgctttcctttgagtagaacgttataacttaatcttcataatgcttttag
||||||||||||||||||| || ||||| || || |||||||||||  |   ||| || |||| ||| ||  | | ||||  | |  | || |||||  |||                || | | |||    |||   |  ||| || |   ||   || |    ||||| || |||   |          
AGATGAAGATGTCCATTCTTCTCGGTGTTGTGCATATGAACTTGGGTCTGGCTTTGAGCTATTACAACGCCAGCTACTTTAACGAGCCACTTGATATCTGgt----------------aagtgtgccattcatttccatactgcattacc--gaaacgatcaa-gtaactcaacctttccag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258597|gb|BG881505.1|BG881505
EST:     CTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAG                         GTACCAGTTTGTGCCACAGATTATTTTCCTTAACTGTCTATTTGGGTATCT
genomic: CTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAGgtgctcactt ... atgcttttagGTACCAGTTTGTGCCACAGATTATTTTCCTTAACTGTCTATTTGGGTATCT