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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATCGTACTGGTCATCATGGTTTCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagttttattgttaattaatgtacggttgaaattctaagaacaatattcgttatttataaaattcttcactcctttttttttttgtag

Basic information

species Glycine max
transcript GLYMA11G11960.3
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214005069|gb|DB985679.1|DB985679
EST:     TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGT----                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
EST: gi|209726038|gb|BW672761.1|BW672761
EST:     TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGT----                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
EST: gi|22930235|gb|BU547374.1|BU547374
EST:     TCCATCATTTTTGCTTATCTGTCTGCTAGCCACCAAAATAACTAGT----                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
EST: gi|9899890|gb|BE608858.1|BE608858
EST:     TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGT----                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
EST: gi|58014892|gb|CX701634.1|CX701634
EST:     TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGT----                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
EST: gi|120491021|gb|EH219188.1|EH219188
EST:     TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAA                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
EST: gi|9899883|gb|BE608851.1|BE608851
EST:     TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGT----                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
EST: gi|209714967|gb|BW650813.1|BW650813
EST:     TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGT----                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
EST: gi|209722770|gb|BW682868.1|BW682868
EST:     TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGT----                         CAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC
genomic: TCCATCATTTTTTCTTATCTGTCTGCTAGCCACCAAAATAACTAGTGTAAgtaagtttta ... ttttttgtagCAACTAGCCATGCCTTCTTGCCTTTCCGAACATTGATATCATGCCTCGTTC