1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattcttttttgtgcaaaagtattactgctgcttacaacaatattttaaatgttaccatgaataatgtagttataaatttatttttctcttttctgcag
species | Glycine max |
transcript | GLYMA11G11490.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|7028762|gb|AW458545.1|AW458545
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|11275017|gb|BF325341.1|BF325341
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|15814707|gb|BI786982.1|BI786982
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|23732846|gb|BU764597.1|BU764597
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: GGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAGEST: gi|208175474|gb|GD976869.1|GD976869
genomic: GGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: GGCCGGGGAGAATTGTGGAAG ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: GGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattcttttttgtgcaaaagtattactgctgcttacaacaatattttaaatgttaccatgaataatgtagttataaatttatttttctcttttctgcag
- - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG