Sequence
atgc intronic sequence ATGC exonic sequenceATCAACCCTGCCGACAGTATAATCCATGTGGTTGCCAAACGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagaggcatttagaattgtagtgtttggggattttctacattccacgctggtttcacaaatt...
Basic information
species | Glycine max |
transcript | GLYMA11G05760.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G05760.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g16390.1 (Oryza sativa), 5'ss of exon 11
ATCAACCCTGCCGACAGTATAATCCATGTGGTTGCCAAACGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagagg-catttagaattgtagtgtttggggattttctacattccacgctggtttcacaaatt-----
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ATCAGCCTTGTCGACAATACACTCCTTGTGGTTGCCAGTCTGCATGTGGGAAGCAATGTCCATGTCTCACAAATGGTACCTGCTGTGAGAAATACTGTGGgtgagctacttcaattattca------tattgcagactccgagaacattttttcttctagatattaataatgttgcttatgaaaacaaaactgtgtagatgtatac
upper sequence: GLYMA11G05760.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G157820_T02 (Zea mays), 5'ss of exon 11
ATCAACCCTGCCGACAGTATAATCCATGTGGTTGCCAAACGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagaggcatttagaattgta---gtgtttggggattt-tctacattccacgctggtttcacaaatt
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ATCAGCCTTGTCGACAATATAATCCTTGTGGTTGTCAATCTACATGCGGAAAGCAGTGTCCATGTCTTTCAAATGGGACATGTTGTGAGAAATACTGTGGgtgag-ttacatgttttctttgcatcagcctattagcatgcataaatttggttgtcaatctgcatgtggaaaccagtgtccatgtcttacaaatgggacac---
upper sequence: GLYMA11G05760.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 9
ATCAACCCTGCCGACAGTATAATCCATGTGGTTGCCAAACGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagaggcatttagaattgtagtgtttggggattttctacattccacgctggtttcacaaatt-------------
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ATCAGCCTTGTCGGCAGTACAACCCATGTGGTTGCCAATCTGCATGTGGAAAGCAGTGTGCTTGTCTTCTAAATGGGACATGCTGTGAAAAATACTGTGGgtgagcctttg---tttctcatt-----ctgaatagcacagaattaaatataaactcatttcctgg--attttc---atttcccaattcttccaaaaatggccaagtactgatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6566978|gb|AW234605.1|AW234605EST: AAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGG ATGCCCCAAGAGCTGCAAGAATCGATTTCGTGGCTGTCATTGTGCTAAGAG
genomic: AAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagctttt ... tcatatcaagATGCCCCAAGAGCTGCAAGAATCGATTTCGTGGCTGTCATTGTGCTAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCAACCCTGCCGACAGTATAATCCATGTGGTTGCCAAACGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagaggcatttagaattgtagtgtttggggattttctacattccacgctggtttcacaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgggg