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AATTTCTTGATGCCTCCAAGTTCCGGACCCAGAGGATGGAAAAATAGTTCCAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatggaaaatcagcgtgtgttttgttttgggtagagtaatcccaccaaaagacatttctttatcaaatgcaatttctcttaccaatgatctgacag
species | Glycine max |
transcript | GLYMA11G03650.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAATTCTTTTCAAGAATGCTGCTTEST: gi|207707676|gb|GD689106.1|GD689106
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|13311789|gb|BG405440.1|BG405440
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: GCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCATATCTCTTCAAGAATGCTGCTTEST: gi|298191871|gb|HO035953.1|HO035953
genomic: GCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|16106417|gb|BI894157.1|BI894157
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|8827625|gb|BE211355.1|BE211355
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|193497044|gb|FK462056.1|FK462056
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|208137784|gb|GD938420.1|GD938420
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGAEST: gi|208088408|gb|GD890696.1|GD890696
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGA
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAAGAATGCTGCEST: gi|151403372|gb|EV273182.1|EV273182
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAA-GAATGCTGC
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|208297488|gb|GE094467.1|GE094467
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|10845117|gb|BF068283.1|BF068283
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|16106407|gb|BI894147.1|BI894147
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTEST: gi|193684401|gb|FK621873.1|FK621873
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTCTTGATGCCTCCAAGTTCCGGACCCAGAGGATGGAAAAATAGTTCCAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatggaaaatcagcgtgtgttttgttttgggtagagtaatcccaccaaaagacatttctttatcaaatgcaatttctcttaccaatgatctgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA