Sequence
atgc intronic sequence ATGC exonic sequenceTGGTTGGAAACTCTCAGTTTACTTTGCATCCATTTCAGCCGTATAAGCTTATATATGCATTTTTGCTAGCTGAAGTGGGGAAGGTTTCAGACTCACTGAAgtaagttcatgtaaccttattttaattgtgattactttttatatgatctcttattgttattagcgatgttgttaaatggtggcgctatggttgccatggt...
Basic information
species | Glycine max |
transcript | GLYMA11G03580.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G03580.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G163277_T01 (Zea mays), 5'ss of exon 8
TGGTTGGAAACTCTCAGTTTACTTTGCATCCATTTCAGCCGTATAAGCTTATATATGCATTTTTGCTAGCTGAAGTGGGGAAGGTTTCAGACTCACTGAAgtaagttcatgtaaccttattttaattgtgattactttttatatgatctcttattgttattagcgatgttgttaaatggtggcgctatggttgccatggt
|| |||| || ||||||| || | | || |||||||| |||||||| |||||||||| |||| | |||||||||||||||||| || || ||| ||| ||| || ||| || | | | | || || | || | | | |||| | | || | | | | |
TGCTTGGTAATTCTCAGTATATCCTACTACCCTTTCAGCCATATAAGCTGATATATGCATACATGCTTGTTGAAGTGGGGAAGGTTTCTGATTCTTTGAGgtaggtt---gttggcttgttcataacaagcaaatgacacgtgctttccctagcttgtacttgt-acattgtgatacagttgaatataaacttctctag-
upper sequence: GLYMA11G03580.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 8
TGGTTGGAAACTCTCAGTTTACTTTGCATCCATTTCAGCCGTATAAGCTTATATATGCATTTTTGCTAGCTGAAGTGGGGAAGGTTTCAGACTCACTGAAgtaagttcatgtaaccttattttaattgtgattactttttatatgatctcttat-tgttattagcgatgtt--gttaaatggtggcgctatggttgccatggt
|| ||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| || | ||||||| ||||| |||||||| ||| |||||||||||| |||| || || || |||| ||| || || | | | || || ||||| ||||| |
TGCTTGGAAACTCTCAGTTTGTTCTGCTACCATTTCAGCCATATAAGCTTATATATGCACACATGTTGGCTGAAGCAGGGAAAGTTTCAGAATCATTGAAgtaagttcttgtagtttttcttc--ttctgatg---tttcatgcaattttgtgtatgcctttctaaatgttaggttaattcag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18690853|gb|BM519701.1|BM519701EST: ATATATGCATTTTTGCTAGCTGAAGTGGGGAAGGTTTCAGACTCACTGAA GTACTGCCAAGCACTACTGAAATCCTTGAAAACTGGCCGTGCTCCAGAAGT
genomic: ATATATGCATTTTTGCTAGCTGAAGTGGGGAAGGTTTCAGACTCACTGAAgtaagttcat ... ttgatttcagGTACTGCCAAGCACTACTGAAATCCTTGAAAACTGGCCGTGCTCCAGAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTTGGAAACTCTCAGTTTACTTTGCATCCATTTCAGCCGTATAAGCTTATATATGCATTTTTGCTAGCTGAAGTGGGGAAGGTTTCAGACTCACTGAAgtaagttcatgtaaccttattttaattgtgattactttttatatgatctcttattgttattagcgatgttgttaaatggtggcgctatggttgccatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG