Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGGGGATGATGCTTGGAAAGATAGGGAAGCTGCTGTCTTGGCTCTTGGTGCTATAGGTGAAGGTTGCATCAATGGTCTTTATCCGCATCTGTTGGAGgtattttctgttctttggttctgatgaattttatccaaaagcaaatggcttgattgtgggaaaaatagtttaatttgttttaaaatttgattaaagtatg...
Basic information
species | Glycine max |
transcript | GLYMA10G42960.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os04g59494.2 (Oryza sativa), 5'ss of exon 13
TGGTGGGGATGATGCTTGGAAAGATAGGGAAGCTGCTGTCTTGGCTCTTGGTGCTATAGGTGAAGGTTGCATCAATGGTCTTTATCCGCATCTGTTGGAGgtattttctgttctttggttctgatgaattttatccaaaagcaaatggcttgattgtgggaaaaatagtttaatttgttttaaaatttgattaaagtatg-----------------------------------------------------------------------
|| |||||||| ||||| || |||||||||||||| ||| || |||||||||||| || || ||||| | ||| || ||||| ||||| | ||||||||| || | || || |||| || | ||| ||| | || | ||| | | ||| || | | | || | |
AACTGACGATGATGCGTGGAAGGAGAGGGAAGCTGCTGTTTTGTCTATTGGTGCTATAGCGGAGGGATGCATTACTGGGCTATATCCCCATCTTCCGCAGgtatttttatcaattaactattgctgtatttaattccttga------acttcattaggaaaagagtagcatg-tgtgtattgagactcacttttgatttcttcatctgtctattctgcttcccttctcattgtgaattgtacctatcctaacatgttctattcatttgcag
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 13
TGGTGGGGATGATGCTTGGAAAGATAGGGAAGCTGCTGTCTTGGCTCTTGGTGCTATAGGTGAAGGTTGCATCAATGGTCTTTATCCGCATCTGTTGGAGgtattttctgttctttggttctgatgaattttatccaaaagcaaatggcttgattgtgggaaaaatagtttaatttgttttaaaatttgattaaagtatg
| ||| ||||| || |||||| | |||||||||||||| |||||||| || ||||| | |||||| ||||| ||||||||||| || || ||| |||| | || ||| ||| | | || | | | || | | | | ||| | | | ||| |||| || | || | ||| | |
TTCTGGTGATGAGGCCTGGAAACAAAGGGAAGCTGCTGTTTTGGCTCTCGGCGCTATTGCTGAAGGCTGCATGAATGGTCTTTACCCTCACTTGTCTGAGgcaagtttggtt--ttgatccacatca-tctcatatatatgatttttctttgctca--gttgatatacattaacatgct--aacgccttatttctgcag-
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 13
TGGTGGGGATGATGCTTGGAAAGATAGGGAAGCTGCTGTCTTGGCTCTTGGTGCTATAGGTGAAGGTTGCATCAATGGTCTTTATCCGCATCTGTTGGAGgtat-tttctgtt--ctttggttctgatgaattttatccaaaagcaaatggcttgattgtgggaaaaatagtttaatttgttttaaaatttgattaaagtatg
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TACTGATGATGAGACCTGGAAAGAAAGGGAAGCTGCCGTTTTAGCTCTTGGTGCTGTAGCTGAGGGTTGCATTACTGGTCTTTATCCTCATTTATCAGAGgtaaacttttgttgactcagaaactgagtagctaagttctgaattggttgcattttgatttataataatcgttgcaagtatgatgtttgtgctctgagac---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192327364|gb|FK019581.1|FK019581EST: GTGCTATAGGTGAAGGTTGCATCAATGGTCTTTATCCGCATCTGTTGGAG ATTGTGGCATTTCTTGTCCCTCTTCTTGATGATAAGTTTCCTCTGATACGA
genomic: GTGCTATAGGTGAAGGTTGCATCAATGGTCTTTATCCGCATCTGTTGGAGgtattttctg ... gcatttatagATTGTGGCATTTCTTGTCCCTCTTCTTGATGATAAGTTTCCTCTGATACGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGGGGATGATGCTTGGAAAGATAGGGAAGCTGCTGTCTTGGCTCTTGGTGCTATAGGTGAAGGTTGCATCAATGGTCTTTATCCGCATCTGTTGGAGgtattttctgttctttggttctgatgaattttatccaaaagcaaatggcttgattgtgggaaaaatagtttaatttgttttaaaatttgattaaagtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg