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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatcttgttttgttcatcacatagttatttttctgttcatcacatagactatatctcattcatgttatttttatttttttcag

Basic information

species Glycine max
transcript GLYMA10G42940.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 13
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 13
AGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatcttgttttgttcatcacatagttatttttctgttcatcacatagactatatctcattcatgttattt--------ttatttttttcag----
|||||||||||  ||||||||||| |||||||||||||||| || || ||||||||   |    |  | ||    ||      |    ||     || ||  ||    || | |||    || |   ||         || |  |||||||    
AGTGCTATTGGACAGGGAATGACTCGAAAGGATCATTCTGAAGTCTCTAACCAGgtgcgtatcatcatcttagaaattcgcctgcccgttcctgcttgattgcaggagctct-tcttgaccacgaagttcgagccagattctaattttcagtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452473|gb|BM953883.1|BM953883
EST:     CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG                         CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATG
genomic: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATG
EST: gi|15813509|gb|BI785784.1|BI785784
EST:     CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG                         CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
EST: gi|16283344|gb|BI945501.1|BI945501
EST:     TATTGGTGAGGGAATGACTAGAAAGGGATCATTCTGATGTGTCCAACCAG                         CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
genomic: TATTGGTGAGGGAATGACTAGAAA-GGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
EST: gi|16283207|gb|BI945427.1|BI945427
EST:     CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG                         CTCTACGCAGATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
EST: gi|16279679|gb|BI943560.1|BI943560
EST:     CTATTGGTGAAGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG                         CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAAGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
EST: gi|7686714|gb|AW757362.1|AW757362
EST:     GTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG                         CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
genomic: GTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG