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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaattactgttgtgtttagattgtttcttttcctagttttgttaatttcaagaagaaatatctattatctaacatttagttcttcaatttcctcttttgataag

Basic information

species Glycine max
transcript GLYMA10G42220.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 8
AACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaattactgttgtgtt-tagattgtttcttttcctagt-tttgttaatttcaagaagaaatatctattatctaacatttagttcttcaatttcctcttttgataag
||| |||||||| |||||  |||| |||||||| || || |||||||||||    |||||    || || || |||||||||||||||||||||||| |||||||     ||  |||   ||   ||  |  |||||    ||||  |||| |  | |      |  || ||  || | ||  |    ||| |   | |  ||   |  |    
AACTGCTGTGAGGGCATATTCAAAGCAGCTTTTCATCGCCCTGAAGCATCTGAAAAACTGCAAAGTGCTGCACTGTGATATAAAGCCAGATAATATGCTGgtatg-----atatctggcttgccatacttcttttctcacactagcatttgctcttgttttttggccat-tcggttttgtagaa----gttttgtcactatctacataaa----

upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 8
AACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaattactgttgtgtttagattgtttcttttcctagttttgttaatttcaagaagaaatatctattatctaacatttagttcttcaatttcctcttttgataag
||| ||||| || ||||| || ||||||||||| |||||||| ||||||||  |||||||||| ||||| ||||||||||||||||||||||||||| ||||| |  | || ||   || | | |  |  ||| | |  | ||||||| |   | | |  |  || | |  |||   |   | |   |  |   ||| |||||||       
AACTGCTGTAAGGGCATATGCTAAACAGCTTTTCATTGCTCTCAAGCATCTTAGGAACTGTGGCGTTCTGCATTGTGATATAAAGCCAGATAATATGCTGgtaggttttaagtatacttttatgtcca--gttgcctgccttagttttttatttgttataataaattttgcattgaattttactatatattc--attgcctctttcag----

upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S250_28V6.1 (Physcomitrella patens), 5'ss of exon 7
AACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaaattactgt-----tgtgt---------ttagattgt----------------ttcttttcctagttttgttaat-----ttcaagaagaaatatctattat-ctaacatttagttcttcaatttcctcttttgataag----------------------------------------------
 || || ||  |||| || ||||||||| | ||||| ||||| || ||| | ||||||||||| ||| | || || || || ||||| |||||||||||||||||   ||  |  | |     | |||          |||| |||                ||  |   |  ||||| || ||     || |  ||     ||||||| | |||  || |  ||  |   |   | ||| | | |                                                
GACTGCAGTCCGAGCTTATGCAAAACAGTTATTTATCGCTCTCAAACATTTGCGGAACTGTGGAGTTTTGCACTGCGACATCAAGCCTGATAATATGTTGgtatgttaaatgtgttttctacgtatgtgcaacagagctagagtgtagagcgtacagtgagtttagtggacctgttttattcatccttttttagtaattggcatctattgtgctagtatatttttactttttacacccttatcacagtaacattcctgcaaaactccgtacttatgtagggactatttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6913830|gb|AW395360.1|AW395360
EST:     TCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTG                         GTAAATGAGTCTAAAAATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATG
genomic: TCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGgtatgcctaa ... ttttgataagGTAAATGAGTCTAAAAATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATG