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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataagttctttttcctggatttttctctttgttttcccagataatgacttaaaattttgatgtgtcaaaattcag

Basic information

species Glycine max
transcript GLYMA10G41940.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 7
TTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataagttctttttcctggatttttctctttgttttcccag-ataatgactt----aaaattttgatgtgtcaaaattcag--------------------------------------------------------------------------------
||||||| || |||||||||||||  ||||| ||||||||  ||||||||||| | || ||||| ||||||||||||||||||||||| |||||||| ||||    |   | |||||||     |     |  |||| ||||    ||  | | ||    |||||||   | |    | ||  |                                                                                 
TTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAATGGCTTGTCAGgttagctttctactttttcacttttagcatttcttgtattcctgttatttttatttttacaaaatttgtttttaagtacatgtacattcctcttgggggctctgagagaaagcttctgaatatatgggtctatagttatttcattcttacaaaatttgtttttag

upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 7
TTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaat----aagttctt----------tttcctggatttttctc---tttgttttcccagataatgacttaaaattttgatgtgtcaaaattcag-------------------------------------------------------------------
||||||| || |||||||||||||  ||||| ||||||||  |||| |||||| | || ||||| | ||||||||||||||||||||| |||||||| |||| |  |    | ||| |           | || || |||  | ||   ||| ||||  || |   ||  || || |     |   |     ||  |                                                                   
TTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAGCTGGCATGCTTCCTTCAACAAATGGCTTGTCAGgtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaagtacatgtacattcctcttgggggctctgagagaaagcttctgaatatatgggttatagttatttaattcttgcaaaatttgtttttag

upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0581g00010.t01 (Vitis vinifera), 5'ss of exon 4
TTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataagttctttttcctggatttttctctttgttttcccag-ataatgactt----aaaattttgatgtgtcaaaattcag-------------------------------------------------------------------------------
||||||| || |||||||||||||  ||||| ||||||||  |||| |||||| | || ||||| ||||||||||||||||||||||| |||||||| |||| |  |   | | |||||     |        |||| ||||    ||  | | ||    |||||||   | |    | ||  |                                                                                
TTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAATGGCTTGTCAGgtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaagtacatgtacattcctcttggagggtctgagagaaagcttctgaatatatgggttatagttatttaattcttgcaaaatttgtttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294129|gb|FG986218.1|FG986218
EST:     GAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAG                         GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTG
genomic: GAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataag ... caaaattcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTG