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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGCAGTATAGAAGAAGGAAAAGCCACACTTAGAATGAAGCAAGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgcaagtactcaactacatttttttattgctcaaatttctaggaagataatgattgatttcttatgatgtgaatgctttctgcattttag

Basic information

species Glycine max
transcript GLYMA10G41920.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 13
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 13
AAATGGCAGTATAGAAGAAGGAAAAGCCACACTTAGAATGAAGCAAGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgcaagtactcaactacatttttttattgctcaaatttctaggaagataatgattgatttcttatgatgtgaatgctttctgcattttag--
|   ||||  || || ||||| || || || || |||||||||||||| ||||||||||| || |  ||||||||||| |||||||| ||| |||| |||||||||    ||||| | |  | | | | |  |  |   | | ||    |   |  | | ||    | ||| |  ||  |    |||    
ACGAGGCATCATTGAGGAAGGGAAGGCAACCCTAAGAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAATAAAGgcaagtga--aactaaaatcctctctagttacatataaaaagtaggctctctctcttcttttcctgtctgacttgttaatatgctttgcag

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 13
AAATGGCAGTATAGAAGAAGGAAAAGCCACACTTAGAATGAAGCAAGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgcaagtactcaactac-atttttttattgctcaaatttctaggaagataatgattgatttcttatgatgtga-atgctttctgcat-tttag
|   || |  || |||||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||||||||| | || ||||||||| || | ||   |   | || | ||||| |||      ||| || |  |   | |   | | | ||| ||  ||  |     |  ||
ACGGGGAATGATTGAAGAAGGGAAAGCGACACTCAGAATGAAGCAAGACATGCAGAGTGATAATTATAATATGTATGATCTCATTGCATATCGTATCAAGgcaagtgctaacctttgaacatgttgtagctcacattc-----aaggtactactctttattcaagggtttgacatttttgttattcgtccag

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 13
AAATGGCAGTATAGAAGAAGGAAAAGCCACACTTAGAATGAAGCAAGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgcaagtactcaactaca--tttttttattgctcaaatttctaggaagataatgattgatttcttatgatgtgaatgctttctgcattt--tag-----------------------
|   ||||  || |||||||| ||||| || ||| | |||||||||||||||||||||||||| |  |||||||||||||||||||||||| | || |||||||||    |   | |    | || | |  |  ||    |  | || || | | | |  | | |  |    ||     |  | | ||  ||                        
ACGAGGCATGATTGAAGAAGGCAAAGCTACGCTTCGGATGAAGCAAGACATGCAGAGTGATAATTTTAATATGTATGACCTTATTGCATATCGCATCAAGgcaagtctgtactcatagacatcttaactatttcaaca--tgagtagttactaaattacctatcaaaaaaaaaaaaacatgagtagttactaattgatttcacttcttttgtccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561586|gb|CD487424.1|CD487424
EST:     TGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAG                         TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTAT
genomic: TGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgcaagtactc ... tgcattttagTTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTAT
EST: gi|254327577|gb|GR837186.1|GR837186
EST:     TGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAG                         TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTAT
genomic: TGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgcaagtactc ... tgcattttagTTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTAT