Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGAAGGTTGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGCGTTGTTTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATGgtaaagctctacttaactgttaacgtaggatttgagcactttcatgagtatcttatcaaacttgaattatcactctgggtctacatttcaacaatatagttggtcatatttttcaattgaatcacgtttgttcttcag

Basic information

species Glycine max
transcript GLYMA10G38680.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478693|gb|AW666367.1|AW666367
EST:     TGGCGTTGTNTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATG                         GTCAGGAAAATGCC
genomic: TGGCGTTGTTTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATGgtaaagctct ... tgttcttcagGTCAGGAAAATGCC
EST: gi|208291829|gb|GE093315.1|GE093315
EST:     TGGCGTTGTTTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATG                         GTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCAC
genomic: TGGCGTTGTTTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATGgtaaagctct ... tgttcttcagGTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCAC
EST: gi|208190303|gb|GD991847.1|GD991847
EST:     ACCAGCTAAAGATTTAGACATATATCTTAATG                         GTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCAC
genomic: ACCAGCTAAAGATTTAGACATATATCTTAATGgtaaagctct ... tgttcttcagGTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCAC