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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATCTCTGTACCGTGAGGGGCCTGGTAAAGATCCATATAGACCTGATCAAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcaccttcttgactatgcttctcctatgcatataatatatttcctttaaaattgcatgttatctagatgcttcatagctgtggtttatgagatccta...

Basic information

species Glycine max
transcript GLYMA10G30220.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 5'ss of exon 13
CCAATCTCTGTACCGTGAGGGGCCTGGTAAAGATCCATATAGACCTGATCAAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagc-accttcttgactatgcttctcctatgcatataatatatttcctttaaaattgcatgttatctagatgcttcatagctgtggtttatgagatccta
 |||||  ||||||| |||   || || || ||||||| |||||||||||||||||||||||| |  || ||||| ||  |||||||||||||||| |||||| | |     ||||||  |   ||   |    ||    ||     ||    || | ||  || | | ||| ||  | |  |    |||| |        
TCAATCATTGTACCGCGAGTCACCAGGAAATGATCCATTTAGACCTGATCAAAAGACACCAGTTAAAAACTTCTTCCTGTCTGGCTCTTACACAAAACAGgtatctaaaccattgacttagtcactgtcaccagtaatcaatcagcgctcatcaaataca-attgttttgattctgtaaatttagattttaagcaggaagg

upper sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 13
CCAATCTCTGTACCGTGAGGGGCCTGGTAAAGATCCATATAGACCTGATCAAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacct-tcttgactatgcttctcctatgcatataatatatttcctttaaaattgcatgt-tatctagatgcttcatagctgtggtttatgagatccta---------------------------------------------------------------------------------------
|||||| || || |||||||| |||||||||||||||| |||||| |||||||||||||| || | ||||||||| ||||||||||| |||||||| ||||||     |  ||| |||         |  ||   ||| | | |       ||| |  | ||  | || |   || |   |  ||      |  |   | ||                                                                                       
CCAATCCCTATATCGTGAGGGACCTGGTAAAGATCCATTTAGACCAGATCAAAAGACACCGGTTAAGAATTTCTTCCTTGCTGGCTCATACACAAAACAGgtaatttttgccttaacttcatccactcactgataatactgtttggttaccaaactgtcctgcatttccaccagcatttaatttgaaaagaaaaatgacataatggattaatatacattcttaataagctagttgggtggctttctcattcacaattcatcattgggacatgtgtttgggcttgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899120|gb|BE608147.1|BE608147
EST:     AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAG                         GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
genomic: AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: gi|8825652|gb|BE209445.1|BE209445
EST:     AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAG                         GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
genomic: AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: gi|209729713|gb|BW669813.1|BW669813
EST:     AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAG                         GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
genomic: AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: gi|192309148|gb|FG999081.1|FG999081
EST:     AAAAGACACCAGTGAGGAATTTCTTCCTTGCTGGCTCTTACACAAAGCAG                         GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
genomic: AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: gi|209702721|gb|BW652764.1|BW652764
EST:     AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAG                         GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
genomic: AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: gi|151411529|gb|EV281340.1|EV281340
EST:     AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAG                         GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
genomic: AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: gi|209717714|gb|BW671532.1|BW671532
EST:     AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAG                         GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
genomic: AAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG