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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagtttttccatccccttatctcactttaatcaaacttggcatcaatgtatttaataattcttcccgttttatttgcag

Basic information

species Glycine max
transcript GLYMA10G28890.2
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208332454|gb|GE127781.1|GE127781
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAA
EST: gi|9901583|gb|BE610551.1|BE610551
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|193602836|gb|FK555389.1|FK555389
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208230699|gb|GE029878.1|GE029878
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208178857|gb|GD979636.1|GD979636
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGA
EST: gi|193446310|gb|FK415767.1|FK415767
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|6718529|gb|AW306176.1|AW306176
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|17518857|gb|BM187899.1|BM187899
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|13789722|gb|BG652313.1|BG652313
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGT
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGT
EST: gi|207700520|gb|GD683627.1|GD683627
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|12689947|gb|BG156283.1|BG156283
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTG
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTG
EST: gi|5126832|gb|AI748568.1|AI748568
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208179905|gb|GD979298.1|GD979298
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAA
EST: gi|7029401|gb|AW459184.1|AW459184
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208301126|gb|GE097363.1|GE097363
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208314951|gb|GE115715.1|GE115715
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGG
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGG
EST: gi|193455652|gb|FK420455.1|FK420455
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208062621|gb|GD860726.1|GD860726
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGA
EST: gi|193632834|gb|FK583370.1|FK583370
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGG
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGG
EST: gi|193731110|gb|FK664348.1|FK664348
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAG
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAG
EST: gi|208116726|gb|GD915428.1|GD915428
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208313796|gb|GE114238.1|GE114238
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTAT
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTT-GCAAAACGGATAAAGAGTGAGCGGAAGTTAT
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     TGAATCAAAGACGGAAGCTGGAGAAGACACCAAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: TGAATCAAAGACGGAAGCTGGAGAAGACACCAA-GGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208127510|gb|GD921700.1|GD921700
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|207774425|gb|GD746291.1|GD746291
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTAT
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTT-GCAAAACGGATAAAGAGTGAGCGGAAGTTAT
EST: gi|207776362|gb|GD750355.1|GD750355
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|207717257|gb|GD697234.1|GD697234
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208077024|gb|GD876009.1|GD876009
EST:     CTGAATCAAAGACGGAAGCTGGTGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|19053178|gb|BM731845.1|BM731845
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAG
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAG
EST: gi|208050685|gb|GD844200.1|GD844200
EST:     CTGAATCAAAGACGGAAGCTGGGGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCG
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCG
EST: gi|208025913|gb|GD824367.1|GD824367
EST:     TGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: TGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208314836|gb|GE115684.1|GE115684
EST:     CTGAATCAAAG-CGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAA-TTCGCAAAACGGNTAAAG
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAG
EST: gi|7234592|gb|AW569928.1|AW569928
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|7146167|gb|AW508152.1|AW508152
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTGTGCGAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208192254|gb|GD990200.1|GD990200
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|208236911|gb|GE029781.1|GE029781
EST:     CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
EST: gi|12772505|gb|BG237432.1|BG237432
EST:     CTGAATCATAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT                         GATGAACTCTAGGAAGTATGCAAAACGGATAAAGAGTGAGCGGAAGTTATA
genomic: CTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagttttt ... ttatttgcagGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATgtaagtttttccatccccttatctcactttaatcaaacttggcatcaatgtatttaataattcttcccgttttatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG