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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACAATGgtactttcaatatttcctgtatcacaaatacacagatatcaacaatagtttgagtttttatttgttagaacttagaagcctaaatggcacaagcaatgct...

Basic information

species Glycine max
transcript GLYMA10G11720.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G11720.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G033592_T01 (Zea mays), 5'ss of exon 13
CATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACAATGgtactttcaa--tatttcctgtatcacaaatacacagatatcaacaatagtttgag--tttttatttgttagaacttagaagcctaaatggcacaagcaatgct
|||| |||| ||||||||||| || ||||||||||||||||  || ||||||||||| || || ||  ||||||| |||   |||   || ||||||||||||  | |||  | | |||| |    |||| |   |  | |||    |   | ||   | ||| |          ||  | |   || ||   ||| | |    
CATGTTACACAACTTTGGTGGGAACATTGAAATGTATGGCATACTTGATTCAATTTCATCTGGCCCCATTGATGCCCGTACAAGTTACAATTCAACAATGgtaagtgcaagttttgtcctatggagcaaacatttaattttcatgtgtgagtggaaaatctttgtcgtccgctgtttcaatgttgaagtgaatcaatcca----

upper sequence: GLYMA10G11720.2 (Glycine max), 5'ss of exon 13
lower sequence: AT5G13690.1 (Arabidopsis thaliana), 5'ss of exon 13
CATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACAATGgtactt--tcaatatttcctgtatcacaaata-cacagatatcaacaatagtttg-agtttttatt--tgttagaacttagaagcctaaatggcacaagcaatgct--------
|||||| || || ||||| ||||| ||||||||||||||  |||| ||||||||||||||||| || |||||||||||||| ||   ||| ||||| ||||||  |  | | ||   | |  |  | |  |  ||||  | | | |    || |  || |   | |  | |     |||||||     |||      |   ||| |        
CATGCTTCACAATTTTGGAGGCAACATTGAAATGTATGGTGCTCTTGATTCAATTTCTTCAGGACCAGTTGATGCTCGTGTTAGCAAAAATTCAACCATGgtaactcataactacgacattcacaatatgtttcacattttttatcttatgtctataggtgagactattttctccgcttagaaatg-gaatcttgttatttatgttgcacatag

upper sequence: GLYMA10G11720.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0064g00370.t01 (Vitis vinifera), 5'ss of exon 13
CATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACAATGgtactttcaatatttcctgtatcacaaatacacagatatcaacaatagtttgagtttttat-ttgttagaacttagaagcctaaatggcacaagcaatgct---
 ||| | |||||||||||||| |||||||||||||||||||   | ||| || ||||||| || || |||||||||||  |||||  ||| ||||| ||||||  | ||||| ||  |  ||   |    || |  || || |  | | |  | || | || |||  || |     |||  | ||   || || |  |      
TATGTTGCATAACTTTGGTGGAAATATTGAAATGTATGGCATATTAGATGCAGTTTCTTCTGGTCCAGTTGATGCTCGCATCAGTAAAAATTCAACCATGgta--tgcaatagttgttacattttagtccca-acctagcatct-tggctgtaattataatcttgaaagcagcacaaaggttgaagcacataacctgtaagcct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322077|gb|FK012181.1|FK012181
EST:     CAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACAATG                         GTAGGTGTTGGTATGTGCATGGAAGGAATAGAACAGAACCCTATTGTTTAT
genomic: CAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACAATGgtactttcaa ... tattttgcagGTAGGTGTTGGTATGTGCATGGAAGGAATAGAACAGAACCCTATTGTTTAT