1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGCTGCTCAAAGTATAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttccttcttctcttttactttaattacaccttgttatttgttaacttgacgtacataactttacatgtgtgaatgcatttatgaacttgcaaaca...
species | Glycine max |
transcript | GLYMA10G04300.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCA GTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGAEST: gi|208041279|gb|GD841686.1|GD841686
genomic: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttcct ... tattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
EST: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCA GTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGAEST: gi|193331305|gb|FK294179.1|FK294179
genomic: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttcct ... tattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
EST: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCA GTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGAEST: gi|208078606|gb|GD876138.1|GD876138
genomic: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttcct ... tattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
EST: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCA GTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
genomic: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttcct ... tattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGCTGCTCAAAGTATAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttccttcttctcttttactttaattacaccttgttatttgttaacttgacgtacataactttacatgtgtgaatgcatttatgaacttgcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG