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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGGAACTATGAAGTTTTGAAAAATAAATTTGAAAGCTTGCCACCAAATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtcccattattagattgtggtgatcttatgcttggaggaatgtttttgctgctgtatttactgactgcatgattatgtttccag

Basic information

species Glycine max
transcript GLYMA10G02400.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185792|gb|HO028103.1|HO028103
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
EST: gi|193309119|gb|FK273939.1|FK273939
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
EST: gi|193393876|gb|FK358483.1|FK358483
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
EST: gi|193693187|gb|FK627198.1|FK627198
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
EST: gi|193395088|gb|FK358589.1|FK358589
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGG-AGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
EST: gi|193387888|gb|FK354733.1|FK354733
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGG-AGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
EST: gi|193393660|gb|FK360674.1|FK360674
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
EST: gi|193316342|gb|FK281498.1|FK281498
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGG-AGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
EST: gi|193407493|gb|FK371497.1|FK371497
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAAGACAGC
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCA-GACAGC
EST: gi|193388067|gb|FK354268.1|FK354268
EST:     ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAG                         ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA
genomic: ATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtccc ... atgtttccagACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTGGGAACTATGAAGTTTTGAAAAATAAATTTGAAAGCTTGCCACCAAATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGgtactgtcccattattagattgtggtgatcttatgcttggaggaatgtttttgctgctgtatttactgactgcatgattatgtttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA