Sequence
atgc intronic sequence ATGC exonic sequenceGTCATTGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATgtatgttttatatacttttgtggtgttatgttatttcttaattatcaagtacataaaggggaactactgactagccgtttagtctggttcaattttctta...
Basic information
species | Glycine max |
transcript | GLYMA10G02040.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 14
GTCATTGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATgtatgttttatatacttttgtggtgttatgttatttcttaattatcaagtacataaaggggaactactgactagccgtttagtctggttcaattttctta
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GTTATGGGAAACCATGTAGCTGTGACAGTTGGTGGGTCAAATGGTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTTACATgtatgt--caatcattttcattctac-gtctgtttccttgatttt-----atataaaaatataccagtc-ttaaccatttgatctcgcctctttgacag-
upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 14
GTCATTGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATgtatgttttatatacttttgtggtgttatgttatttcttaattatcaagtacataaaggggaactactgacta-gccgtttagtctggttcaattttctta---
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GTTATGGGAAATCACGTGGCCATTACTGTAGGTGGATCAAACGGTCATTTTGAGCTGAATGTATTCAAGCCTCTGATTGCTAGTGGTCTCCTACGTgtatgttct---tctgttcacagc-ttttgtttttgatccctatttaaaagcctaaatccaagttcaggactttgccctgtagctatgaccagtcaggaaaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193401454|gb|FK369277.1|FK369277EST: ATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCAT TCGCTGAGACTGCTTGGAGATTCATCTGCTTCCTTTGAAAAGAATTGTGTG
genomic: ATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATgtatgtttta ... attctgatagTCGCTGAGACTGCTTGGAGATTCATCTGCTTCCTTTGAAAAGAATTGTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATTGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATgtatgttttatatacttttgtggtgttatgttatttcttaattatcaagtacataaaggggaactactgactagccgtttagtctggttcaattttctta
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT