Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAGgtacaatttaatgttcctcttgattaattgaaaattaaaatatgcgcacctatttttatgcggttcccaacagtcaaaaactacatttgcattctgatcttttacatcaaacgtcttgcttgtgactgagacag

Basic information

species Glycine max
transcript GLYMA10G00550.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 13
TCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAGgtacaatttaatgttcctcttgattaatt--gaaaattaaaatatgcgcac--ctattttta-tgcggttcccaacagtcaaaaactacatttgcattctgatcttttacatcaaacgtcttgcttgtgactgagacag
||  ||||  | || || ||||| |||||||| ||  |||| |||||||| || ||||||||||| || |||| | |||||  |||||||||||||     | |    |   |  ||| | |  | |  | | |    |   ||  ||  || || |  |  |  ||||||                                                             
TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGgtatgtgctgactagcaattatatttactctgtacctcatagggagaatactactgcttctaatatgtgtatcaacag-------------------------------------------------------------

upper sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 13
TCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAGgtacaatttaatgttcctcttgattaattgaaaattaaaatatgcgcacctatttttatgcggttcccaacagtcaaaaactacatttgcattctgatcttttacatcaaacgtcttgcttgtgactgagacag
 |||||||||||||||| | |||||| ||| |||| ||||| ||||| ||  ||||||||||| |||| || | | ||||   |||||||||||||  | |||   ||  |||      |     |||   || |  |    ||| ||||    |    |  |   |      || ||                                                 
GCAGCAGAGTTGCAGATCTTTACTGATTTCCTGAGACTTGTCCTAGATATATTAAATGCAATTTTGACGTACGCATTGCCGAGAAATCCTGAGgtatcactta---tttttctcagc--agcatgaatcgcaaaaatcttttctagttttgcctg--ctctgattcttggtttctgcag------------------------------------------------