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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCTATAATTGCAGGGGGACGTTTGgtaagtggttttcagaactggactgtgatttttctcatcagtatttaattcttgatttgtatgcttttcaagacatatgcttttatataaagcataatgc...

Basic information

species Glycine max
transcript GLYMA09G39770.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 5'ss of exon 9
GTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCTATAATTGCAGGGGGACGTTTGgtaagt------ggttttcagaa--ctggactgtgatttttctcatcagtatttaattctt--------gatttgtatgcttttcaaga---catatgcttttatataaagcataat-gc--------------------------------------------------------
 |||| |||||||| ||||||||||| |||||||| |||||  | || ||||||||||| |||||||  |||||||| || || ||| | ||||||      |||||||      |||   || || |  | ||   |  | ||||             |||   |||   |    |||   |||  | |||| |||| |      | ||                                                        
ATTGGATTTCAAGCCATTGCTGAAGCTCTTGGACTAGCTGCAATCAAAGCAGCAGTTGCTATCACTGGCATAATTGCTGGTGGCCGTCTCgtaagtctcaatggttttctagtttctgttttgagactcatatccgaataagttaaacaacaaaagagagatccatataagtgatgagaaaacattagattttctatagaatgggtttgcatgaacatataatgaaactctatagctaatgctgcttctgcggtgctgaatcatag

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCTATAATTGCAGGGGGACGTTTGgtaagtggttttcagaactggactgtgatttttctcatcagtatttaattcttgatttgt-atgcttttcaagacatatgcttttatataaagcataatgc-------
 |||| |||||||| ||||||||||| |||||||| |||||  | || ||||||||||| |||||||  |||||||| || || ||| | ||||||     |||    |||  |   | |||     |    | | |  ||   ||  || |  |     |||| | || | | ||  | | | | ||  |       
ATTGGATTTCAAGCCATTGCTGAAGCTCTTGGACTAGCTGCAATCAAAGCAGCAGTTGCTATCACTGGCATAATTGCTGGTGGCCGTCTCgtaagt----ctcaa---tggttttctagtttctgttttgagactcatatccgaataagttaaacaacaaaagagagatccatataagtgatg-agaaaacattagat

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCTATAATTGCAGGGGGACGTTTGgtaagtggttttcagaactggactgt---gatttttctcatcagtatttaattcttgatttgtatgcttttcaagacatatgctttt-atataaagcataatgc
 |||| |||||||| ||||||||||| ||||| || ||||| || || |||||||| || || ||||| |||||||| || || ||| | || |||   |   | |  |  ||| |   |  ||     ||||  ||  | ||  | |||   |   || | | |  | ||| |||  || |    || || | 
ATTGGATTTCAAGCCATTGCTGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTGGCTATTACTGCAATAATTGCTGGTGGCCGTCTAgtgagt--ctcagatactttaacttttgagggttcagatatcaaaata-agttaattattaccaaagttgttaggtgaaatgttttagatttgctacaaaagg-

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 8
GTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCTATAATTGCAGGGGGACGTTTGgtaagtggt---tttcagaactggactgtgatttttctcatcagtatttaatt--cttgatttgtatgcttttcaagacatatgcttttatataaagcataatgc
 ||||||||||||| ||||||||||| || |||||||||||||||||||||  |||||||||  |||| |||||||| || ||||| |||||||||  |   | |    | |  ||  ||  |   ||  | | |    ||||  ||||| || |     | |     |||     |||| | |  |  | ||  
ATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTGgtaagtcatgcatgttttgattcaaccatgtctaaacttttgattggggaattttcttgagttctccaactcttttagcat----ctttagaaattgagtcatt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996864|gb|BM086236.1|BM086236
EST:     CTGTTAAGGCAGCAGTTGCCATCACTGCTATAATTGCAGGGGGACGTTTG                         CTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCTGAAATT
genomic: CTGTTAAGGCAGCAGTTGCCATCACTGCTATAATTGCAGGGGGACGTTTGgtaagtggtt ... ttctttacagCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATT