Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggttttgcttgtttactacattgctattttttctgtttataagccatcttattggtgttttgtttcttttcag

Basic information

species Glycine max
transcript GLYMA09G38110.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 13
AGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggttttgcttgtttactacattgctattttttctgtttataagccatcttattggtgttttgtttcttttcag
||||||||||||||||| ||||| || | ||||||| ||||||| ||||| |||||    |||    |     || | ||    || | | ||   |    ||| || ||  | | ||  | |  ||||||
AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttgatgttcgggctgcgttcaccttctctttgagcacgtcccaactaat--gcgattcttcttctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253833|gb|BE821599.1|BE821599
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|27426282|gb|CA937802.1|CA937802
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|27426098|gb|CA937618.1|CA937618
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|9898667|gb|BE607635.1|BE607635
EST:     CACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|19053919|gb|BM732586.1|BM732586
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|20812032|gb|BQ296510.1|BQ296510
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|16277795|gb|BI942566.1|BI942566
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|21255992|gb|BQ452880.1|BQ452880
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|7235272|gb|AW570601.1|AW570601
EST:     GAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: GAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|193391746|gb|FK354237.1|FK354237
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|16277730|gb|BI942533.1|BI942533
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|9258589|gb|BE346736.1|BE346736
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
EST: gi|16284553|gb|BI946150.1|BI946150
EST:     CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG                         CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGgtctggtttt ... ttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTG