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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCAGAAGTAAATCGAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaaaatcttatattgctacccttggaagtttttaaaaggaggtaaaggaatgaaaagggatgggatggtgtggtcattatttcctcttgctcg...

Basic information

species Glycine max
transcript GLYMA09G34170.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10235601|gb|BE804489.1|BE804489
EST:     GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAG                         GAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
genomic: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaa ... cgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
EST: gi|31473646|gb|CD415674.1|CD415674
EST:     GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAG                         GAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCGTAGGTCTGG
genomic: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaa ... cgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGG
EST: gi|20498852|gb|BQ273782.1|BQ273782
EST:     GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAG                         GAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
genomic: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaa ... cgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
EST: gi|254313915|gb|GR831544.1|GR831544
EST:     GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAG                         GAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
genomic: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaa ... cgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCAGAAGTAAATCGAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaaaatcttatattgctacccttggaagtttttaaaaggaggtaaaggaatgaaaagggatgggatggtgtggtcattatttcctcttgctcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgg